Plant FIBer expression Database

Lus10028832 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12230 166 / 1e-51 MED19A unknown protein
AT5G19480 153 / 1e-46 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017449
[exp]
242 / 2e-81 AT5G12230 207 / 7e-68 unknown protein
Lus10002150
[exp]
216 / 3e-71 AT5G12230 202 / 1e-65 unknown protein
Lus10008738
[exp]
214 / 2e-70 AT5G12230 191 / 3e-61 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G193800
[exp]
202 / 1e-65 AT5G12230 173 / 2e-54 unknown protein
Potri.009G156200
[exp]
197 / 8e-64 AT5G12230 166 / 2e-51 unknown protein
PFAM info
Representative CDS sequence
>Lus10028832 pacid=23177273 polypeptide=Lus10028832 locus=Lus10028832.g ID=Lus10028832.BGIv1.0 annot-version=v1.0
ATGGATCCTAATAGCACGAAGTTCGGAAGTGGACCCAGAGAGCTAACCGGTGCTGTTGATCTTATAAGTCATTTCAAATTGTTGCCCCATCACAATTATT
TTTGCAAGAAATCACTTCCTGTTTCAATTGCGGACACACATTACCTTCATAATGTGGCTGGAGATACTGAAATCAGAAAAGGGGATGGGATGCAGTTGGA
TCAGCTTATCCAGAATAATTCCCGGCCAATCGATGGAAGTATACGGATACAGCCTTTCGATCTTGATGTGCTAGGGGAGGCATTCCAGCTCAAGGAAACC
ACTCCTGTAGACTTACCTGCTTCGGAAAAGGGGACTCCTACAATTGCTGGAAAATCAAAGAGCGAGTCGAAAGACAAAGACAGAAAGCATAAAAAGCATA
AGGACAGAGATAAGGACAAGGATAGAGAGCATAAGAAGCACAAGCACCGTCATAAAGACAAAGATAAAGATCGAAGTAAAGATAAGGAGAAGAAGAAGGA
TAGAAGTGGCCATCAAGAATCTAGTGATCACACCAGAAAGCACCATGAAAAGAAACGGAAACACGATGGAGATGAAGATCTAAACGATGTACACAGGCAC
AAGAAAAGTAAGCACAAGAGTTCAAAGATGGATGAAATGGGCGCAATTAGGGTAGCAGGCTAA
AA sequence
>Lus10028832 pacid=23177273 polypeptide=Lus10028832 locus=Lus10028832.g ID=Lus10028832.BGIv1.0 annot-version=v1.0
MDPNSTKFGSGPRELTGAVDLISHFKLLPHHNYFCKKSLPVSIADTHYLHNVAGDTEIRKGDGMQLDQLIQNNSRPIDGSIRIQPFDLDVLGEAFQLKET
TPVDLPASEKGTPTIAGKSKSESKDKDRKHKKHKDRDKDKDREHKKHKHRHKDKDKDRSKDKEKKKDRSGHQESSDHTRKHHEKKRKHDGDEDLNDVHRH
KKSKHKSSKMDEMGAIRVAG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G12230 MED19A unknown protein Lus10028832
[exp]
0 1
AT5G12230 MED19A unknown protein Lus10002150
[exp]
1.0 0.9457
AT5G26610 D111/G-patch domain-containing... Lus10031446
[exp]
4.9 0.9259
AT3G56720 unknown protein Lus10038984
[exp]
5.5 0.8947
AT2G34900 GTE1, GTE01, IM... IMBIBITION-INDUCIBLE 1, GLOBAL... Lus10042803
[exp]
7.1 0.8973
AT1G05410 Protein of unknown function (D... Lus10041201
[exp]
10.4 0.9219
AT3G23770 O-Glycosyl hydrolases family 1... Lus10023226
[exp]
12.3 0.9127
AT1G49180 protein kinase family protein ... Lus10033518
[exp]
12.4 0.9034
AT5G66240 Transducin/WD40 repeat-like su... Lus10021575
[exp]
13.2 0.8907
AT3G49640 Aldolase-type TIM barrel famil... Lus10003486
[exp]
13.7 0.9211
AT1G23890 NHL domain-containing protein ... Lus10030639
[exp]
13.7 0.8955

Lus10028832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.