Plant FIBer expression Database

Lus10028833 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78810 74 / 3e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G109600
[exp]
132 / 9e-34 AT1G78810 103 / 5e-23 unknown protein
PFAM info
Representative CDS sequence
>Lus10028833 pacid=23177196 polypeptide=Lus10028833 locus=Lus10028833.g ID=Lus10028833.BGIv1.0 annot-version=v1.0
ATGGATCCTTATGGACCGCCATTGACGGAGCCTTTGACACCTCAAGATAAACAGCTCATGAACGAAGTCATTTTTCTTCATTACCTCTGGCATCAAGGTC
CTCCTTCAACCCAATTCACCCCTCCCACTCGCCCTTACTCCAACCCTAACCCCAATCCTCCTAACCCTTATCCTCAATTTCCTCATATTCATCATCCCCA
GTTTCCCCATCCTCATCCTCACAGTCTATCGAGGAATCTGGGCGCGTCCAACTTCCCCAGCTTCAAACGAACGAAAAAAAACAAGAGCAAGGGCAAGAGA
AACCGGAATTCCAATGCTCAACAAAGGGATCCCGGTCCAGATTGGCCCGTCGACTCGCCTCCGCCATCACCGCCTCTTTCCGCCTCCGGCTGGCCCTCAT
CCAACCCCAATCACGATCGGAAAGTTTCCGAGCCCGATAACCAGAAGCTGGCGAAGATCGCTGCAATGCATTTGCAGCAAAAAGCTGCGAAACGGTTAAA
GGAATTCCTAGCCGCGGCCGATTCCGACTCCACGGATGAGGAGAAAGATGAAGACGATGACAACGACGGCGAGGAGTATTTCGCCGGCTCCGTGACCGAT
GTTGAGGCGAGTGAGGAGTACAAGTTCCTGCTGAGTGCGTTTGTGGAGGATCATGAACTGAGAGAGCTGTACGAGAGAAGCCAAGAGAATGCGGAGCTTA
TTTGCCTTGCGTGTGAAGCCATGGGCGTTAAATTGGGCAGGACTTACAAAGAAGCTATGGGACTTGCTCGCCATGCATTGACTATTACGAAGACGGGGAG
GATAATGGAGCATAGTACAGTCGTTTGGAAAAGATGCCATAGAGCATTGGGGCAAGTTATGTGCAGAGTTTATGGATGGGATGTCAGCCGGTATCCTGTA
CTTCTTGTGACGAAGGAACCTCTTGGTTTTTCTTTGAAGAATTCAGGCCACCAGACCCAGGTAGAGTGTGAGCCGGAGGGCGATGCTGATTGTATTGACA
ATAGAACACAAGACCCTGACAGCAGACTTGAATCTGTGTCCGGTAACAATGGTGAAGTAACTTGCGGAGAGCGCTCTAGTGATCAGCAGAATAAGAGCAT
AGTCAAGACTTGTGAAGTTGGAAATGATGCCATTGAGAACCCAGTAGTCTCGATGGAGAACATAAAAGAGGGGACAGCATAA
AA sequence
>Lus10028833 pacid=23177196 polypeptide=Lus10028833 locus=Lus10028833.g ID=Lus10028833.BGIv1.0 annot-version=v1.0
MDPYGPPLTEPLTPQDKQLMNEVIFLHYLWHQGPPSTQFTPPTRPYSNPNPNPPNPYPQFPHIHHPQFPHPHPHSLSRNLGASNFPSFKRTKKNKSKGKR
NRNSNAQQRDPGPDWPVDSPPPSPPLSASGWPSSNPNHDRKVSEPDNQKLAKIAAMHLQQKAAKRLKEFLAAADSDSTDEEKDEDDDNDGEEYFAGSVTD
VEASEEYKFLLSAFVEDHELRELYERSQENAELICLACEAMGVKLGRTYKEAMGLARHALTITKTGRIMEHSTVVWKRCHRALGQVMCRVYGWDVSRYPV
LLVTKEPLGFSLKNSGHQTQVECEPEGDADCIDNRTQDPDSRLESVSGNNGEVTCGERSSDQQNKSIVKTCEVGNDAIENPVVSMENIKEGTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G78810 unknown protein Lus10028833
[exp]
0 1
AT1G49480 B3 REM19, RTV1 related to vernalization1 1 (.... Lus10021006
[exp]
12.2 0.6830
AT3G62770 ATATG18A autophagy 18a, Transducin/WD40... Lus10004501
[exp]
16.1 0.5681
AT2G18280 TUB AtTLP2 tubby like protein 2 (.1.2) Lus10028309
[exp]
19.4 0.6320
AT3G59510 Leucine-rich repeat (LRR) fami... Lus10025578
[exp]
27.7 0.5760
AT5G19290 alpha/beta-Hydrolases superfam... Lus10041399
[exp]
28.4 0.6471
AT4G12040 AtSAP7 stress-associated protein 7, A... Lus10030150
[exp]
28.5 0.6505
AT1G26610 C2H2ZnF C2H2-like zinc finger protein ... Lus10036890
[exp]
28.8 0.6207
Lus10039510
[exp]
29.7 0.5827
AT5G62620 Galactosyltransferase family p... Lus10036686
[exp]
37.0 0.6308
AT5G64030 S-adenosyl-L-methionine-depend... Lus10033481
[exp]
42.4 0.5970

Lus10028833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.