Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10540 808 / 0 3-phosphoinositide-dependent protein kinase (.1) AT5G04510 804 / 0 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT4G24350 390 / 2e-129 Phosphorylase superfamily protein (.1.2) AT4G24340 389 / 3e-129 Phosphorylase superfamily protein (.1) AT3G08720 226 / 1e-65 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 221 / 6e-64 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT4G28940 200 / 1e-57 Phosphorylase superfamily protein (.1) AT1G48490 197 / 6e-52 Protein kinase superfamily protein (.1.2.3) AT5G58140 194 / 2e-51 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT1G45160 194 / 2e-51 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017448 [exp] 962 / 0 AT3G10540 821 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10038647 [exp] 890 / 0 AT3G10540 813 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10037921 [exp] 741 / 0 AT3G10540 694 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10025213 [exp] 214 / 1e-58 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 203 / 3e-56 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10005470 [exp] 197 / 2e-52 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036653 [exp] 194 / 2e-52 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10026572 [exp] 193 / 4e-51 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10027196 [exp] 194 / 8e-51 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G028800 [exp] 828 / 0 AT3G10540 809 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.010G232800 [exp] 821 / 0 AT3G10540 834 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.008G028700 [exp] 436 / 2e-147 AT4G24350 436 / 3e-154 Phosphorylase superfamily protein (.1.2) Potri.008G028600 [exp] 411 / 1e-137 AT4G24350 429 / 2e-151 Phosphorylase superfamily protein (.1.2) Potri.008G028500 [exp] 397 / 3e-132 AT4G24350 418 / 2e-147 Phosphorylase superfamily protein (.1.2) Potri.006G109600 [exp] 209 / 3e-59 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G161538 [exp] 203 / 1e-58 AT4G28940 457 / 2e-162 Phosphorylase superfamily protein (.1) Potri.012G073700 [exp] 205 / 5e-58 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 203 / 3e-57 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.013G080400 [exp] 194 / 7e-56 AT4G24350 205 / 4e-64 Phosphorylase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [flax] [poplar] PUP PF01048 [flax] [poplar] PNP_UDP_1 Phosphorylase superfamily CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028834 pacid=23177250 polypeptide=Lus10028834 locus=Lus10028834.g ID=Lus10028834.BGIv1.0 annot-version=v1.0 ATGTTGGCAATGGAGAACGATTTTGATTCTAAGCTACGGATTCAGGGTGGCAATAATAGCTCTTCTGTTACCACATCAACTTCTTCTTCTTCAGCTGCTG GTAATAGTGGGAATCCGCCCAGATCTAACAGTTTTTCTTTTAGAGCACCCCAAGAGAATTTCTCAGTTCAGGATTTTGAGCTTGGGAAGATATATGGAGT TGGTTCTTACTCAAAGGTGGTGAGGGCCAAAAAGAAGGATACTGGAATTGTGTATGCGTTGAAGATTATGGACAAAAAGTTTATCACAAAAGAAAATAAA ACAGCTTATGTGAAGTTGGAAAGAATAGTGCTTGATCAATTGGATCATCCAGGAGTTGTTCGCCTGCATTTTACTTTTCAAGATACATTTTCCTTGTATA TGGCACTTGAATCCTGCGAAGGGGGAGAGCTTTTTGACCAAATAACTAGGAAGCACCGTTTATCAGAGGAAGAAGCTCGGTTTTACGCTGCTGAGATCGT AGATGCTCTTGAATACATACATAATATGGGGTTGATTCATCGAGATATCAAGCCAGAGAACTTGCTTCTCGCGGCAGATGGACATATAAAAATTGCTGAT TTTGGAAGTGTGAAGCCCATGCAAGATAGTCGAATTACTGTGCTGCCAAACGCAGCTTCTGATGATAAAGCTTGCACATTTGTGGGCACAGCCGCATATG TGCCTCCAGAAGTACTCAACTCTTCTCCTGCAACTTTTGGAAATGACCTATGGGCACTTGGATGCACATTGTACCAGATGCTTTCAGGAACTTCTCCATT CAAAGATGCTAGTGAATGGCTTATATTTCAAAGAATTGTAGCCAGGGACGTACGTTTTCCCGAGTATTTTTCGAAAGAAGCTAGAGACCTCATAGATAGG CTATTGGACATGGAACCCAGAAGAAGACCGGGAGCAGGGCCTGATGGTTATGCAGCTCTAAAGATGCATCCTTTCTTTAAAGGGGTTGACTGGGATAATT TAAGATCACAAACCCCTCCTGAACTTGCTGCTGACCCAACAGCTCAGTCTAGTGAAGGGAGCGAACCTGATTCGTGGAATCCTACTCATGTTGGTGACTG TTCTTCTGTACCAAATGATTTGAATGTTCCAGCTTCACCAACTCCGGAAGGATCTGGTCATGTAACACGCCTTGCCTCGATCGATTCATTCGACTCCAGA TGGCAACAGTTTCTGGATCCCGGGGAATCTGTAATGATGATCTCCATGGTGAAGAAATTACAGAAGTTGACGAGTAAGAAAGTGCAGCTGATTCTCACCA ACAAACCGAAGCTGATTTACGTAGACCCCTCCAAGCTTGTGGTGAAAGGCAATATAATATGGTCCGACAATTCCGACGACCTTAGCGTTCAAGTGACCAG TCCTTCGAATTTCAAGATCTGTTCGCCAAAGAAGGTACTGTCATTTGAAGATACAAAGCAAAGAGCATGGCAATGGAAAAAGGCGATCGAGAGTTTTCAA AACCGAAGAGGATCATATCTGGGTCTAGTCACTGTTTACTCCCCAGAGGAAACTGCCTTCTTCTCCACCGGAGCTTTCAAGCCCGACCCGATTCTCCCCT TTCTCGATCTCTCCGGTCGCAGATTCAAGATCGGCACTGTAAACGCGCAGAGAGTAGTGTACGTGAGATGCGGCGTCGGATTGGTGAACGCTGCTTCAGC GACGCAACAGATGGTGGACAATTTCAAGATAACTGGAATTGTCCATTTCGGGATATCTGGGAACTTGAACAACTCCATGAACATTGGAGACGTCTCTGTT CCCAGCCAGATTGCCGACACTGGTCTCTGGAATTGGCAGAACCCAGATGTAGATGTGGATCCAGCTGATATTGCTCACCTGGAAGTTGGGAGCTTTAATG TTCCGAAAGGAGATGGAGTTGTGAATGAGTTGGGACAAATTGGGTACAGTTTACAGCAGTTGTACTCTGCTTCTTCAGTTCATCCCAACACTCCCGATTC GCTGCTTTGGATGAACGTCACTCGCCACTGGCTTCATCTTGCTGATGCTATTCAGGAGATGGAGCTAGAGCAGTGTGTGAATGCAACGACTTGCCTCGAT CAAAAGCCGAAAGTAGTAGTGGGACTGAGAGCCTCAACGTCCAACATTTTTGTGGACAACAAAGCTTACAGAGACTTTCTCTTCCAAACTTTCCAGGTTT CTTCATCTGACATGGAGAGCTCTGCAGTTGTAACGGTATGCTTGTCAAATGGGTATCCTGTGATAGTGATTAGAGGGATGTCGGACATAGCCGGGAAACA ATCGGGAACCAATGCGATTCGGACATTTGGCAGCCTCGCAGCTCTTAACACTGCCAACGTTGTTCTGGAGTTCATCACCAAGTTACGTGGACATGTCTCC GTCTCATTCCCTCTGCCAAAGATTTTCAGATGA
AA sequence Show only first row Show all	>Lus10028834 pacid=23177250 polypeptide=Lus10028834 locus=Lus10028834.g ID=Lus10028834.BGIv1.0 annot-version=v1.0 MLAMENDFDSKLRIQGGNNSSSVTTSTSSSSAAGNSGNPPRSNSFSFRAPQENFSVQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENK TAYVKLERIVLDQLDHPGVVRLHFTFQDTFSLYMALESCEGGELFDQITRKHRLSEEEARFYAAEIVDALEYIHNMGLIHRDIKPENLLLAADGHIKIAD FGSVKPMQDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIVARDVRFPEYFSKEARDLIDR LLDMEPRRRPGAGPDGYAALKMHPFFKGVDWDNLRSQTPPELAADPTAQSSEGSEPDSWNPTHVGDCSSVPNDLNVPASPTPEGSGHVTRLASIDSFDSR WQQFLDPGESVMMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLVVKGNIIWSDNSDDLSVQVTSPSNFKICSPKKVLSFEDTKQRAWQWKKAIESFQ NRRGSYLGLVTVYSPEETAFFSTGAFKPDPILPFLDLSGRRFKIGTVNAQRVVYVRCGVGLVNAASATQQMVDNFKITGIVHFGISGNLNNSMNIGDVSV PSQIADTGLWNWQNPDVDVDPADIAHLEVGSFNVPKGDGVVNELGQIGYSLQQLYSASSVHPNTPDSLLWMNVTRHWLHLADAIQEMELEQCVNATTCLD QKPKVVVGLRASTSNIFVDNKAYRDFLFQTFQVSSSDMESSAVVTVCLSNGYPVIVIRGMSDIAGKQSGTNAIRTFGSLAALNTANVVLEFITKLRGHVS VSFPLPKIFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	0	1
AT1G01710			Acyl-CoA thioesterase family p...		Lus10030385 [exp]	3.0	0.8228
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	3.5	0.8546
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	3.5	0.8480
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	3.7	0.8596
AT1G36320			unknown protein		Lus10033109 [exp]	4.6	0.8516
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	6.2	0.7777
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10013563 [exp]	6.3	0.8210
AT5G11720			Glycosyl hydrolases family 31 ...		Lus10008067 [exp]	8.4	0.7789
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10034433 [exp]	9.4	0.7745
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015068 [exp]	10.1	0.8326

Compare expression of checked genes

Lus10028834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.