Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04490 279 / 3e-93 VTE5 vitamin E pathway gene 5 (.1) AT5G58560 158 / 4e-46 FOLK farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017447 [exp] 519 / 0 AT5G04490 330 / 3e-113 vitamin E pathway gene 5 (.1) Lus10031858 [exp] 151 / 4e-44 AT5G58560 341 / 1e-118 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Lus10031288 [exp] 147 / 1e-41 AT5G58560 321 / 1e-109 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232600 [exp] 325 / 2e-111 AT5G04490 320 / 2e-109 vitamin E pathway gene 5 (.1) Potri.009G074800 [exp] 170 / 1e-50 AT5G58560 354 / 8e-123 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.009G074700 [exp] 165 / 2e-49 AT5G58560 332 / 3e-115 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.001G279900 [exp] 163 / 1e-48 AT5G58560 333 / 8e-116 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.008G029000 [exp] 89 / 3e-21 AT5G04490 117 / 7e-33 vitamin E pathway gene 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0234 [flax] [poplar] CTPT PF01148 [flax] [poplar] CTP_transf_1 Cytidylyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10028835 pacid=23177202 polypeptide=Lus10028835 locus=Lus10028835.g ID=Lus10028835.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCGTCGTCCTTCATCGTCGCAACCACCTGCTTCTACACCACTCAATCTTCTTTACTGCATTTCTCTTCTTCATGTTCGCCGAATCGATTAA TATTCCCTCTCCGCCGCCCGCCGGCCTCTCCGTTATTCCTCCGATCCAAGGGCTCTTATCTGCTTCGCCTTCCTCAAGTCGCCATCGGAGTTGGATCTGA TCTAATTCAAGACGCCGGAGCCACGGTCGCTGTCCTCGCCGGCGCCTATGCTCTCGTGCGATCTTTCGATGCCCTGACTCGGCGACAGATTATCCAGCAG TTGCTATGTTTTGGAACAGAAATTAAGCAGAAAACTGGTTCATGTTCTTTCTGGGTTACTATTCGTCATTTCTTGGCCAATTTTCAGAATAGCACCTCCA CAGAGGCGCGCTACTTCGCGGCAATAGTGCCTCTCATCAATTGCGTGAGGCTTGTTATCCACGGTTGTTCGTTGGCTACTGATGAATCTCTAATCAAGTC AGTTACCAGAGAAGGAAAGCCAGAGGAGTTGCTCAGAGGTCCTTTATACTATGTTCTCACACTGATCGTATGCACTCTCGTCTTTTGGCGCGAATCTCCA GTTGGAATCATCTCTGTGGCAATGATGTGCGGTGGGGATGGTATGGCTGATATTATAGGAAGAAGATTTGGGTCAATGAAACTCCCATACAATCAGGAGA AGAGCTGGGTCGGTAGTCTGTCCATGTTCTTGTGCGGCTTCTTCATCTCTACCGGGACGCTGTACTACTATTCAAAGCTGGGATACTTTCAAATGGACTG GAGTGTGGTGATTCCCGGGGTTGCGCTGGTCGCCTTGACAGCAACAGCAATGGAGTCTCTTCCGGTAACGAATGTAGTCGATGACAATATATCGGTTCCT TTAGTTAGCATGATATCTGCATGTATACTTGAGTTTTGGTTAGTAGCAGCTTATTGA
AA sequence Show only first row Show all	>Lus10028835 pacid=23177202 polypeptide=Lus10028835 locus=Lus10028835.g ID=Lus10028835.BGIv1.0 annot-version=v1.0 MASSSSFIVATTCFYTTQSSLLHFSSSCSPNRLIFPLRRPPASPLFLRSKGSYLLRLPQVAIGVGSDLIQDAGATVAVLAGAYALVRSFDALTRRQIIQQ LLCFGTEIKQKTGSCSFWVTIRHFLANFQNSTSTEARYFAAIVPLINCVRLVIHGCSLATDESLIKSVTREGKPEELLRGPLYYVLTLIVCTLVFWRESP VGIISVAMMCGGDGMADIIGRRFGSMKLPYNQEKSWVGSLSMFLCGFFISTGTLYYYSKLGYFQMDWSVVIPGVALVALTATAMESLPVTNVVDDNISVP LVSMISACILEFWLVAAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Lus10028835 [exp]	0	1
AT2G30170			Protein phosphatase 2C family ...		Lus10010968 [exp]	1.0	0.9051
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10001339 [exp]	9.1	0.8991
AT2G23390			unknown protein		Lus10038137 [exp]	11.6	0.8852
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10014022 [exp]	15.3	0.8832
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	15.5	0.8940
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	16.5	0.8959
					Lus10030090 [exp]	18.0	0.8962
AT5G62960			unknown protein		Lus10039964 [exp]	20.9	0.8899
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	24.1	0.8864
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10003337 [exp]	29.5	0.8860

Compare expression of checked genes

Lus10028835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.