Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11290 650 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 456 / 3e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 437 / 8e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 433 / 2e-144 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 424 / 4e-143 MEF22 mitochondrial editing factor 22 (.1) AT4G33990 427 / 9e-143 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 420 / 5e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 418 / 3e-141 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 411 / 4e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 402 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 874 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035815 [exp] 447 / 1e-150 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 438 / 3e-148 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 429 / 9e-148 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 434 / 1e-144 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 429 / 1e-143 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038400 [exp] 430 / 5e-143 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 423 / 7e-143 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 426 / 2e-142 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191000 [exp] 744 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G181800 [exp] 467 / 2e-158 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 442 / 7e-150 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 437 / 2e-148 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G005700 [exp] 434 / 3e-147 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 437 / 2e-146 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 428 / 7e-146 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 431 / 3e-145 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 424 / 1e-143 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 421 / 8e-143 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028837 pacid=23177242 polypeptide=Lus10028837 locus=Lus10028837.g ID=Lus10028837.BGIv1.0 annot-version=v1.0 ATGTACTCCAAGTGTAAAAGAGTCGATCTTGCTTCGAACATTTTCGAGAAGTTGCAGAAGAAAACAACTGTATCATGGAATGCTATGATACTAGGTTACG CCCAAAATGGATGCGCCAACGAGGCTTTAAATTCCTTCTGCGAAATGCAGTCTAAGAATATAAAGCCGGATTCTTTCACAATGGTCAGTGTGATTCCAGC TCTCGCAGAGTTGTCGATTCCTCGACAAGCAAAGTGGATTCACGGGCTTGTGGTGAGAAGGTTCCTGGACAGGAATGTTTATGTGATGACAGCTCTTGTG GATATGTATGCAAAATGTGGAGCCATTCATATTGCAAGAAGACTCTTTGACTTGATGGATTCAAGGCATGCGATAACTTGGAATGCTATGATAGATGGGT ATGGAGTTCATGGACATGGACGTGCTGCTGTAGATTTGTTCATGGATATGCAAAAGGGAGATATTCATATTAAGCCGAATCACATAACATTCCTATGTAT TCTATCAGCTTGCAGCCACTCAGGTCTAGTGGACGAAGGTATGCGATTCTTCGATAGCATGGAAATAGATTACGCTCTAGAGCCGGCAATGGACCATTAT GGAGCAGTGGTCGACCTTCTTGGTCGAGCTGGCCGGTTAAAAGAAGCATGGGATTTCATAAAAAAGATGCCTGTTAAACCAGAGATTCAAGTCTACGGAG CAATGTTGGGAGCTTGTAAAATCCACAAGAACGTCGAATTTGCAGAAGAAGCAGCTGATAAGCTCTTCGAATTGAATCCGGAAGAGGGTGGCTACCATGT ACTTCTAGCAAACATCTACGCCACATCATCGATGTGGAAGAAAGTAGCGGAAGTGAGAGCAACAATGCAGAAGAGTGGGCTTCAGAAAACTCCAGGGTGC AGTTTGTTGGAGCTGAGAAATGAAGTCCACAGCTTCTACTCAGGGAGTACAGAACACCCACAGTCCAGAGAAATCTATGCTTACCTCGAGAAGCTCGTTG GTAAGATCAAAGCTTCCGGTTACGTACCGGAGACGAATTCGATCCACGATGTGGAGGATCACGTGAAGGAGCAGTGGCTGAACACTCACAGCGAGAAGCT GGCGATTGCTTTCGGGCTGCTGAACACGACTCCAGGTACGACCATACACATCAGAAAGAACCTGAGGGTTTGCGGGGATTGTCATACTGCGACGAAGTAC ATTTCGTTGGTGACTAAAAGGGAGATTGTCGTACGGGATATGCATAGGTTTCACCATTTTAAGGACGGAGTTTGTTCATGTGGTGATTATTGGTAG
AA sequence Show only first row Show all	>Lus10028837 pacid=23177242 polypeptide=Lus10028837 locus=Lus10028837.g ID=Lus10028837.BGIv1.0 annot-version=v1.0 MYSKCKRVDLASNIFEKLQKKTTVSWNAMILGYAQNGCANEALNSFCEMQSKNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVVRRFLDRNVYVMTALV DMYAKCGAIHIARRLFDLMDSRHAITWNAMIDGYGVHGHGRAAVDLFMDMQKGDIHIKPNHITFLCILSACSHSGLVDEGMRFFDSMEIDYALEPAMDHY GAVVDLLGRAGRLKEAWDFIKKMPVKPEIQVYGAMLGACKIHKNVEFAEEAADKLFELNPEEGGYHVLLANIYATSSMWKKVAEVRATMQKSGLQKTPGC SLLELRNEVHSFYSGSTEHPQSREIYAYLEKLVGKIKASGYVPETNSIHDVEDHVKEQWLNTHSEKLAIAFGLLNTTPGTTIHIRKNLRVCGDCHTATKY ISLVTKREIVVRDMHRFHHFKDGVCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028837 [exp]	0	1
AT4G10270			Wound-responsive family protei...		Lus10031616 [exp]	2.4	0.7829
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10011562 [exp]	4.0	0.6826
AT4G02210			unknown protein		Lus10010304 [exp]	4.8	0.6732
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	5.7	0.7380
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	6.0	0.7712
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10010853 [exp]	7.1	0.6713
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028836 [exp]	7.2	0.7179
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	8.5	0.7138
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	12.0	0.6977
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10010736 [exp]	14.5	0.7011

Compare expression of checked genes

Lus10028837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.