Plant FIBer expression Database

Lus10028838 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52230 77 / 3e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038643
[exp]
132 / 5e-40 AT3G52230 75 / 6e-18 unknown protein
Lus10037916
[exp]
130 / 5e-38 AT3G52230 78 / 5e-18 unknown protein
Lus10017445
[exp]
109 / 1e-31 ND 34 / 0.009
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G233400
[exp]
96 / 9e-26 AT3G52230 74 / 1e-17 unknown protein
PFAM info
Representative CDS sequence
>Lus10028838 pacid=23177174 polypeptide=Lus10028838 locus=Lus10028838.g ID=Lus10028838.BGIv1.0 annot-version=v1.0
ATGGCGAACAAGAACGGAAGCATAGTGGCGACCGGGAAAGACCAACTAGAATCCAGGGAGACCAACAAGGGACCCTTCTCTTTCCTTGCCAACTTCAACT
TTCCGAACCCTTTCCTCAACCTGGATAAACGACCAGATTCTCCTTCTTCTACTGAGCTGCGCCCCAAAGCGGGTGAAACTGAGAAAGAAAGTCAACCCTC
TAAATCTACAGTTGTGAGGTTTCCAAACCCCCGTTCAGTGCTTCCTCCTCCGATTGAAACTCAGGGTGAAGAAGACCGCTCTGGCAAAACTCACAACCCC
ATTGTTATCTGGCAGGTGTATGCAATTGGAGGGTTCCTCGTTCTCAAATGGGCATGGGCGAAATGGAATGAGCGGAATGAGAGAGCGAAAAAGGGATCAT
CTTCGTCTTCATCATCGATGGAGGAGAACCGGTCTCCAGAATACCTGTCACCGACTGAAGGGGACGACTGA
AA sequence
>Lus10028838 pacid=23177174 polypeptide=Lus10028838 locus=Lus10028838.g ID=Lus10028838.BGIv1.0 annot-version=v1.0
MANKNGSIVATGKDQLESRETNKGPFSFLANFNFPNPFLNLDKRPDSPSSTELRPKAGETEKESQPSKSTVVRFPNPRSVLPPPIETQGEEDRSGKTHNP
IVIWQVYAIGGFLVLKWAWAKWNERNERAKKGSSSSSSSMEENRSPEYLSPTEGDD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52230 unknown protein Lus10028838
[exp]
0 1
AT1G75560 zinc knuckle (CCHC-type) famil... Lus10031093
[exp]
1.7 0.9287
AT1G11340 S-locus lectin protein kinase ... Lus10018406
[exp]
2.8 0.9293
AT1G03590 Protein phosphatase 2C family ... Lus10033708
[exp]
3.5 0.9358
AT2G34470 PSKF109, UREG urease accessory protein G (.1... Lus10004922
[exp]
6.3 0.9216
AT1G74790 catalytics (.1) Lus10033116
[exp]
9.6 0.9266
AT5G24530 DMR6 DOWNY MILDEW RESISTANT 6, 2-ox... Lus10000711
[exp]
9.9 0.9165
AT5G37480 unknown protein Lus10013637
[exp]
11.0 0.9081
AT5G49760 Leucine-rich repeat protein ki... Lus10007587
[exp]
11.7 0.9209
AT4G10100 CNX7, SIR5 "co-factor for nitrate, reduct... Lus10030343
[exp]
13.0 0.8989
AT2G26590 RPN13 regulatory particle non-ATPase... Lus10021598
[exp]
13.5 0.8964

Lus10028838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.