Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23160 267 / 2e-83 Protein of unknown function (DUF668) (.1) AT5G04550 235 / 2e-70 Protein of unknown function (DUF668) (.1) AT5G51670 166 / 6e-46 Protein of unknown function (DUF668) (.1) AT5G08660 74 / 8e-14 Protein of unknown function (DUF668) (.1) AT1G34320 68 / 6e-12 Protein of unknown function (DUF668) (.1) AT1G30755 57 / 1e-08 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008987 [exp] 524 / 0 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 196 / 4e-56 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 194 / 2e-55 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 149 / 2e-39 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10031110 [exp] 149 / 2e-39 AT5G51670 454 / 8e-157 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 146 / 5e-38 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10021138 [exp] 137 / 5e-35 AT5G04550 300 / 2e-94 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 87 / 5e-18 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 73 / 2e-13 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G129900 [exp] 291 / 2e-93 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 268 / 6e-83 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 263 / 6e-81 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 192 / 2e-54 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 189 / 3e-53 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 180 / 3e-50 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 165 / 2e-45 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.002G021400 [exp] 71 / 8e-13 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 70 / 1e-12 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 68 / 9e-12 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10028839 pacid=23177235 polypeptide=Lus10028839 locus=Lus10028839.g ID=Lus10028839.BGIv1.0 annot-version=v1.0 ATGGTGGCGGAATCATGGTTTCGAAACCTGTGGAAGTTCCCACGGAAGCATGATTCCAGTCACGATAAATTCCCTCTTGGTGTTCTATCACTGGAAGTTT CGAGCTTAATGTCGAAAGTAGTTCATCTATGGCATGCTCTGAGTGATAAGCAGGTTTCCAGGTTGAGAGAGGAGATCAACAATTGCGTAGGGATCAAGAA ACTCGTGTCCGAGGACGACGATTTCGTCATTAGATTGATTTGTGCCGAGATGATGGAGAGTTTGGTACATGTTGCCAAGTCGGTGGCAAGGTTAGGCAAG AAATGCAGCGATCCGACCCTTAAGAGCTTCGAAACTGCCTTTCACGAACTGGTGAAAATCGGCATTGACCAATATGGATGGGAGTTTTCACTGAAAAAAA TGGATAAAAAGGTTAAGAAGATGGAGCGGTTCGTTTCGATCAACGGTAGTTTGTATCAGGAGATGGAGTTGCTTGCCGATCTTGAGCAGACTTTGCTCAA TCCGAAACTAGAAGAAGCATCCCGAGATTCTCTTCTGGTCCCCTTGGCATGTACACTGGGAAATCCGGTCCAATTTCGAAGTCGAATAAGAGAACCTCCT ATAGTTGGTGGTGGTAGTGGCTTGCTTGCCAAGCAAGCTGTTCCTAGCTTGGGAAAGAAGAAAGGATTCCAATTCTTTTCAGGTCCCCTTGGGACGAAGC CTGCGAATTCAAAGTCCGAATCCGGAAAATTCAGCAAGATTTGGCACAATCGTCGCTCGAAACAAAGTCGATCGTCTCATGTCGGCCCTGTTGTCAATAG CCACATTCTGGATCTTTATACCGGACTTCTCGATGATGCTGTAACGGAAAGTAATCCTGGTAGCTTGGCAGTTTCTACTACCGGTCAGTCGATATATGGG ACCAAGTTCGTAGTAGCTCTTCCTGAAACCCTCGGCGCCACTGCTTTAGCCCTCCACTATGCGAACGTTATAATCGTTTTCGAGAAGCTGGCCGCATCTC CTCATTTGATTAGCCACGATGCCAGGGACGATTTGTACAGTATGTTACCTGCAAGTGTGAGGAATTCACTACGGCAGAAGCTGAAACCATATGCCAAGAG CTTGGCTTCTTCTGCTGGATACGATAATGAGCTGGCGCGAGAGTGGACTGATGCAATAGCTTCAATATTGGAATGGCTATCCCCGCTGGCTCATAACATG ATCAGATGGCAGTCGGATAGAAGTTTCGAGCAGCAGAATTTCGTTTCGAGGACGAATGTTTACCTGGTGCAGACGCTTTTCTACGCAAACCAGGAAAAGA CAGAAGCGACGATCGCTGAGCTTCTCGTCGGTTTGAATTACCTGTGGAGATCGAGTCGGGATCCTGACGGGAGTGGTCCTCCTCCTAGGGAGTGCGCTGC TGGGAGAACGTTTGATGAGTGTGTGGAGCTTGATGACGATTAG
AA sequence Show only first row Show all	>Lus10028839 pacid=23177235 polypeptide=Lus10028839 locus=Lus10028839.g ID=Lus10028839.BGIv1.0 annot-version=v1.0 MVAESWFRNLWKFPRKHDSSHDKFPLGVLSLEVSSLMSKVVHLWHALSDKQVSRLREEINNCVGIKKLVSEDDDFVIRLICAEMMESLVHVAKSVARLGK KCSDPTLKSFETAFHELVKIGIDQYGWEFSLKKMDKKVKKMERFVSINGSLYQEMELLADLEQTLLNPKLEEASRDSLLVPLACTLGNPVQFRSRIREPP IVGGGSGLLAKQAVPSLGKKKGFQFFSGPLGTKPANSKSESGKFSKIWHNRRSKQSRSSHVGPVVNSHILDLYTGLLDDAVTESNPGSLAVSTTGQSIYG TKFVVALPETLGATALALHYANVIIVFEKLAASPHLISHDARDDLYSMLPASVRNSLRQKLKPYAKSLASSAGYDNELAREWTDAIASILEWLSPLAHNM IRWQSDRSFEQQNFVSRTNVYLVQTLFYANQEKTEATIAELLVGLNYLWRSSRDPDGSGPPPRECAAGRTFDECVELDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	0	1
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	1.0	0.8780
AT4G01400			unknown protein		Lus10012607 [exp]	1.7	0.8655
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10005462 [exp]	3.5	0.8454
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	3.7	0.8337
AT2G46380			Protein of unknown function (D...		Lus10003905 [exp]	4.0	0.8014
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	4.9	0.8731
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Lus10028376 [exp]	5.7	0.8161
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	5.8	0.8003
AT1G08860		BON3	BONZAI 3, Calcium-dependent ph...		Lus10033826 [exp]	8.5	0.8001
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10018353 [exp]	9.5	0.8038

Compare expression of checked genes

Lus10028839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.