Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57810 188 / 8e-57 Cysteine proteinases superfamily protein (.1.2.3) AT2G38025 71 / 7e-14 Cysteine proteinases superfamily protein (.1) AT2G27350 43 / 0.0003 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT5G67170 42 / 0.0005 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008986 [exp] 517 / 0 AT3G57810 187 / 9e-58 Cysteine proteinases superfamily protein (.1.2.3) Lus10020438 [exp] 191 / 3e-57 AT3G57810 290 / 3e-97 Cysteine proteinases superfamily protein (.1.2.3) Lus10015803 [exp] 177 / 3e-54 AT3G57810 215 / 3e-71 Cysteine proteinases superfamily protein (.1.2.3) Lus10037002 [exp] 177 / 4e-54 AT3G57810 213 / 2e-70 Cysteine proteinases superfamily protein (.1.2.3) Lus10027758 [exp] 44 / 9e-05 AT2G38025 227 / 4e-75 Cysteine proteinases superfamily protein (.1) Lus10006255 [exp] 45 / 0.0001 AT5G67170 363 / 7e-124 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Lus10005193 [exp] 43 / 0.0005 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234300 [exp] 288 / 6e-95 AT3G57810 195 / 9e-61 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G026100 [exp] 273 / 4e-89 AT3G57810 197 / 2e-61 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G177400 [exp] 186 / 1e-57 AT3G57810 223 / 6e-74 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G050900 [exp] 192 / 3e-57 AT3G57810 301 / 5e-101 Cysteine proteinases superfamily protein (.1.2.3) Potri.006G057400 [exp] 180 / 4e-53 AT3G57810 308 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G110400 [exp] 75 / 3e-15 AT2G38025 276 / 1e-94 Cysteine proteinases superfamily protein (.1) Potri.010G057750 [exp] 44 / 5e-06 AT3G57810 52 / 1e-09 Cysteine proteinases superfamily protein (.1.2.3) Potri.005G140500 [exp] 45 / 9e-05 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.004G196800 [exp] 44 / 0.0003 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.009G160100 [exp] 42 / 0.0006 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10028840 pacid=23177330 polypeptide=Lus10028840 locus=Lus10028840.g ID=Lus10028840.BGIv1.0 annot-version=v1.0 ATGGGATTCAACTTGAAGGTTCAGAAGGGTATTTATGGGTTTCCGCCAAAGTTACAAAGGGAGAGCGGCGGGGAGAAGGAATCAAGTGGAAAGCACGAGA AAGGTGGGATTACCGTTGGAACTGGGCGGAGAAAGATCCACCGGAAGGTGGAGGGAAAAGCCCCCCCCGCCGGTCGCCGTAAATGCGGGATGGAGGAGCC GCCGAACGTATCGCTTCCAGAGAAGATGCGAATAGCATCAGAATCACTTAGCTCCCTGTCGCCCTTATTCCTTGCCGTCATCTCCCCTTTCCACCGCCGT AATTTAACCCTTATTGATATGCTCGGTGTTCTCCGTCCGGGACCTAAGCCTTGGATTCTAACTTCTCTGGCCAATCATTTTGACGGCCACTCTCCGGCGT ACTATAGCCGCCACCTCGGCACCTCTCCCTTCAAATCCTCTCCGGATGAGTCCTCCTCTGCTGTCCTCGGCGGCTTCTCCAACTCTTGCCGCCTCGTAGA CTCTCTATGGCATATCCAGTCATCTGCCTGCAGCAGCTGCATCCGCTCCCTCGTTGAGCCGCCTAGAGGAGAAGGCTCGTGGAACGTGGCGTGGGATGCA CGTCCTGCGCGGTGGTTGACCCGTTCGGACTCCGCCTGGCTTCTGTTCGGTGCTTGCCATGCTCCGATTGAATTCTGGTTTGCGAACGGAACGGATAGTA CTGTTGCGACTGCTGATCAGGTGGTGGAAGTTGAAGGAAATGATGATGCTAGTCCAGCTTCCAGTTCTGAAGTCAAGAAGGAGAAGTCTGCTAATTACAA GGTCACAGGTGTGCTTGCTGATGGGAGATGTTTGTTTAGAGCAATAGCTCATGGTGATTGCCTAAGGAATGGGAAAGAAGCTCCTGACGAAGATTGCCAA AGACAACTAGCTGATGAACTAAGAGCTCGAGTAGCTAAGGAGCTTTCGAAGAGGCGGAAAGAAGTCGAATGCTTCATAGAAGAAGATTTCGATACATATG TCAACAGAATACAGCAGCCCTATGTATGGGGTGGAGAGCCTGAATTGTTGATGGCCTCCCATATTCTGAAGACGATGATCTCGGTCTTCATGATGGACCG GATATCTGGGGATCTAGTGAGCATAACAAGCTATGGTGAAGAGTATGGGAAAGATGGAGAGAACCCCATCAACGTGCTGTTCCATGGATATGGTCACTAT GACTTGTTGGAGGGGTTGAGCAAGAGTTACCAGCAGAAAGCCAAGGTATAG
AA sequence Show only first row Show all	>Lus10028840 pacid=23177330 polypeptide=Lus10028840 locus=Lus10028840.g ID=Lus10028840.BGIv1.0 annot-version=v1.0 MGFNLKVQKGIYGFPPKLQRESGGEKESSGKHEKGGITVGTGRRKIHRKVEGKAPPAGRRKCGMEEPPNVSLPEKMRIASESLSSLSPLFLAVISPFHRR NLTLIDMLGVLRPGPKPWILTSLANHFDGHSPAYYSRHLGTSPFKSSPDESSSAVLGGFSNSCRLVDSLWHIQSSACSSCIRSLVEPPRGEGSWNVAWDA RPARWLTRSDSAWLLFGACHAPIEFWFANGTDSTVATADQVVEVEGNDDASPASSSEVKKEKSANYKVTGVLADGRCLFRAIAHGDCLRNGKEAPDEDCQ RQLADELRARVAKELSKRRKEVECFIEEDFDTYVNRIQQPYVWGGEPELLMASHILKTMISVFMMDRISGDLVSITSYGEEYGKDGENPINVLFHGYGHY DLLEGLSKSYQQKAKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57810			Cysteine proteinases superfami...		Lus10028840 [exp]	0	1
AT5G39785			Protein of unknown function (D...		Lus10015368 [exp]	8.5	0.7882
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	8.8	0.7918
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10038907 [exp]	11.9	0.7812
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	15.3	0.7662
					Lus10002111 [exp]	20.6	0.7685
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10032657 [exp]	22.4	0.7640
AT5G42050			DCD (Development and Cell Deat...		Lus10032412 [exp]	24.6	0.7690
AT3G52760			Integral membrane Yip1 family ...		Lus10022723 [exp]	28.8	0.7066
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10028463 [exp]	36.7	0.7499
AT2G23780			RING/U-box superfamily protein...		Lus10016796 [exp]	37.3	0.7647

Compare expression of checked genes

Lus10028840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.