Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25560 459 / 3e-153 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 461 / 4e-153 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 341 / 4e-107 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 341 / 4e-107 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G06340 256 / 1e-75 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G35753 220 / 6e-63 Domain of unknown function (DUF3444) (.1) AT5G37380 169 / 7e-46 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT5G37440 160 / 2e-44 Chaperone DnaJ-domain superfamily protein (.1) AT5G37750 154 / 2e-42 Chaperone DnaJ-domain superfamily protein (.1) AT4G19570 160 / 5e-42 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008983 [exp] 1253 / 0 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 480 / 1e-161 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 469 / 2e-157 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 248 / 2e-70 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 242 / 3e-68 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 225 / 2e-63 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 224 / 4e-63 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10001744 [exp] 195 / 6e-55 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 192 / 3e-54 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G057200 [exp] 766 / 0 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 727 / 0 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 579 / 0 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 557 / 0 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 538 / 0 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 526 / 7e-178 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 426 / 6e-140 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 424 / 5e-139 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 291 / 3e-85 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 279 / 8e-82 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10028842 pacid=23177297 polypeptide=Lus10028842 locus=Lus10028842.g ID=Lus10028842.BGIv1.0 annot-version=v1.0 ATGGAATGCAATAAAGATGAGGCAGCTAGAGCGAAGGAGATTGCCGAGAAGAAATTTTTAGAGAAGGACTTTCTCGGGGCACGGAAATTTGCACTGAAGG CCCAAAACTTGTATTCTGAGCTTGAAGATATTTCCCAAATGATAGCATCACTCAATGTCTATATTTCTTCGGAGACCAAAGTGAATGGAGAAGAAGATTG GTACGGGATACTTGGAGTTCACCCGCTTGCTGATGATGACATGGTGCGAAAACAGTACAGGAAATTGGCTTTGATGCTTCATCCTGACAAAAATAAGTCA GTTGGAGCCGATGGGGCTTTTAAACTTGTTTCCATGGCATGGAGTTCTTTATCTGATAAAACAAAGAGACTAGCATATGACCAGAAGCGAAAGAGTCACA TTTTCTGGAATGTCTCCAGTTCTGCTAACGGGACGACAGCAACTAAGCCTGCTCCCACCAAAGGAGCTGCAAAGAGCAAGGGTGTTCCTCGAACCGGTCA TTCTTCCACTGCAGCTTCATCTCAGAGGTCGAAGCCAAATACTTTTTGGACTGTTTGTCAGCAGTGCAAGATGCAGTATGAGTACCTTAGAGTTTATTTG AATCATAATCTCCTCTGCCCCAATTGTCATGAGCCATTTATAGCTACTGAAACAGCTCCTCCGTCTTCACATGGCTATAAATCGGTAACACAATGGAATT TTTCCCAGCAATCACAGAAACCAAATGCTCAAGCTTCTAGCAGAAATGCAACGAAATCTAATAATAAAGGTAGATCTTCGAATGGAGGAACCAACTTCCA ATGGACTCCATTCTCCGGATCAGGTACTACTTCATATGCTGCTCGAGCTGCAAGTGTAGTTCAGCAGGCATATGAAAAGGTGAAGAGGGATCGGGAAGAA GCGCAGGCAGCCACGAGAAGAGACGAGACTCTTAAAAGGAAAAGTAATGCTTCCAAAAGAACGGGGAAGAGAAGGAGAAGCATGGAAGATGGTGGTTTAA ATAACAACAAAAAATCTGTTAATGAACAAATGGGTTCAACTTCCGGAAGAGATGGCACAACTAGTGTTGCTGGTGTCACTAAGCTTTCTGGCTTCGGAGC TCCCACTCAGGTTGATATTCAGTACCTTTTGGTGGATAAGGGGAAGATTGTAGTCAGTAAGAAACTCGATGAGTTGAATTCAAGCACTTCGATTGATTTG TTGGTGGCAAATGGCAACTCAACTGAACAGAGCTTACCTGGTGGTCCATCCAATCCAGAAGAGAGGTTGTGCGAGACTGATATTTCTCCTGTTACTTCTG ATGCAAAAACAAATTCCGAGAAATTTGATACAATGTTCATTGATGTGCTAGATCCAGAGTTCCATAACTTTGACAAGGATAGAACTGAGACATGTTTTGG AGAAAACCAAGTATGGGCAGCCTATGATTTTGGCGAGGGATTCCCTCGGCACTATGCTATGATTAACGAGGTGATTTCTCTGGATCCATTGAAGTTGAGG ATTAGTTGGCTCAACCCGAACGCTAATAGCGATTTTGACCCACTGGATTGGTTTTGTTCCAGCTTCTCGAAAAGCTGCGGGGAATTTCAAGTGGGAAGGC GCGAGATTTATAGGTCCCTCTATTGTTTTTCTCACAAGGTTAGGTGGACTAGAGGAACCCATGGGTCAGTTCATATATATCCCAGGAAAGGTGAGGTTTG GGCTCTGTACAGAAACTGGTCCTCCGATTGGAACGAGCTGACAGCAGATGAGGTCATAAGGAAGTATGCTGTGGTGGAAGTTCTTGATGACTATGATGAA GGGCTAGGGGTCGTTGTTGTTCCCCTGGTAAAAGTTGCTGGTTTCAGAACTCTGTTTCGGCAACATTTAGATGTGGGGGAGATCAGAAGAATTCCAAGAG AAGAGATGTTCAGGTTTTCGCACCTTGTTCCGTCTTACGTGCTTACTGGTCAAGAAGGTCCGGACTGTCCAAAAGGTTGTAGGGAATTGGACCCAGCAGC CACTCCGGTTGAATTTCTTCATGTCGTTATAGATGTGAGAAAGGAGGATTTTTTGGAGATCGAGACCGAGACCGAGACAGAGAATGTCGAATAA
AA sequence Show only first row Show all	>Lus10028842 pacid=23177297 polypeptide=Lus10028842 locus=Lus10028842.g ID=Lus10028842.BGIv1.0 annot-version=v1.0 MECNKDEAARAKEIAEKKFLEKDFLGARKFALKAQNLYSELEDISQMIASLNVYISSETKVNGEEDWYGILGVHPLADDDMVRKQYRKLALMLHPDKNKS VGADGAFKLVSMAWSSLSDKTKRLAYDQKRKSHIFWNVSSSANGTTATKPAPTKGAAKSKGVPRTGHSSTAASSQRSKPNTFWTVCQQCKMQYEYLRVYL NHNLLCPNCHEPFIATETAPPSSHGYKSVTQWNFSQQSQKPNAQASSRNATKSNNKGRSSNGGTNFQWTPFSGSGTTSYAARAASVVQQAYEKVKRDREE AQAATRRDETLKRKSNASKRTGKRRRSMEDGGLNNNKKSVNEQMGSTSGRDGTTSVAGVTKLSGFGAPTQVDIQYLLVDKGKIVVSKKLDELNSSTSIDL LVANGNSTEQSLPGGPSNPEERLCETDISPVTSDAKTNSEKFDTMFIDVLDPEFHNFDKDRTETCFGENQVWAAYDFGEGFPRHYAMINEVISLDPLKLR ISWLNPNANSDFDPLDWFCSSFSKSCGEFQVGRREIYRSLYCFSHKVRWTRGTHGSVHIYPRKGEVWALYRNWSSDWNELTADEVIRKYAVVEVLDDYDE GLGVVVVPLVKVAGFRTLFRQHLDVGEIRRIPREEMFRFSHLVPSYVLTGQEGPDCPKGCRELDPAATPVEFLHVVIDVRKEDFLEIETETETENVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10028842 [exp]	0	1
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10028286 [exp]	5.8	0.8637
AT1G48840			Plant protein of unknown funct...		Lus10026581 [exp]	7.4	0.8263
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	8.0	0.8499
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10010041 [exp]	9.9	0.7954
AT3G58050			unknown protein		Lus10016244 [exp]	10.7	0.8459
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012472 [exp]	10.8	0.8043
AT3G18350			Plant protein of unknown funct...		Lus10013865 [exp]	18.2	0.8189
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013468 [exp]	27.3	0.8318
AT1G10330			Tetratricopeptide repeat (TPR)...		Lus10030036 [exp]	29.6	0.8386
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001744 [exp]	29.6	0.8445

Compare expression of checked genes

Lus10028842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.