Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59810 157 / 8e-45 ATSBT5.4 Subtilase family protein (.1) AT2G04160 135 / 8e-37 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G45650 134 / 1e-36 subtilase family protein (.1) AT5G45640 118 / 6e-31 Subtilisin-like serine endopeptidase family protein (.1) AT4G15040 114 / 1e-29 Subtilisin-like serine endopeptidase family protein (.1) AT4G26330 110 / 4e-28 ATSBT3.18, UNE17 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 108 / 9e-28 ARA12 Subtilase family protein (.1) AT2G05920 108 / 1e-27 Subtilase family protein (.1) AT4G10530 107 / 4e-27 Subtilase family protein (.1) AT4G10520 106 / 8e-27 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032425 [exp] 156 / 5e-45 AT5G59810 607 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 157 / 1e-44 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038772 [exp] 157 / 1e-44 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 155 / 3e-44 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10023048 [exp] 153 / 2e-43 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 153 / 3e-43 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039086 [exp] 152 / 4e-43 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10016064 [exp] 143 / 1e-39 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10002780 [exp] 137 / 2e-37 AT5G45650 909 / 0.0 subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001600 [exp] 158 / 3e-45 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.001G468900 [exp] 158 / 4e-45 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.011G050000 [exp] 158 / 5e-45 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 157 / 8e-45 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 153 / 2e-43 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G050300 [exp] 151 / 1e-42 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 150 / 3e-42 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102100 [exp] 150 / 3e-42 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102250 [exp] 149 / 8e-42 AT2G04160 821 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 147 / 3e-41 AT5G59810 754 / 0.0 Subtilase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028843 pacid=23177241 polypeptide=Lus10028843 locus=Lus10028843.g ID=Lus10028843.BGIv1.0 annot-version=v1.0 ATGAAAGCTTCCAATTCCAGCCTGTCGGACGAACGGGACCACCGAGCGTTCCCTTACCAGCTTCAGACTGGTACATCGACAGCTACTACTCACGTGGCTG GACTCGTTGGCTTGATTAAGTCGATTCATCCTGACTGGAGTCCTTCTGCCATTCACTCAGCCATCATGACCACTGGACGGAAGGCCAACCCATTAGGTTA CGGATCAGGACACATCAGGCCGAATCAGGCTGCAGATCCAGGACTTGTTTACGAGATCTCGGTCCCTAACCTTCAGACAGGTTCAGTCACTGTCACAAGG AGAGTCACGAATGCGGGTTCATCTGCTGTTGCTAAGGTCAAGGAGCCGTCTGGAGTTTCAGTGAAAGTGGAGCCTAAAGTCCTGGAGTTCGCAACCCCGG GAGAGGAGAAGATGTTCAAGGTAACATTGACATCCAAGAGGAAAGATTCCATTAAAGGGTTTGAATTTGGCCGACTGACTTGGACAGATGGAGTTCACTA TGTTAGGAGTCCTATCATGGTTTCTGGCGATTTCAAGATTGTTCATTGA
AA sequence Show only first row Show all	>Lus10028843 pacid=23177241 polypeptide=Lus10028843 locus=Lus10028843.g ID=Lus10028843.BGIv1.0 annot-version=v1.0 MKASNSSLSDERDHRAFPYQLQTGTSTATTHVAGLVGLIKSIHPDWSPSAIHSAIMTTGRKANPLGYGSGHIRPNQAADPGLVYEISVPNLQTGSVTVTR RVTNAGSSAVAKVKEPSGVSVKVEPKVLEFATPGEEKMFKVTLTSKRKDSIKGFEFGRLTWTDGVHYVRSPIMVSGDFKIVH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15040			Subtilisin-like serine endopep...		Lus10028843 [exp]	0	1
					Lus10025489 [exp]	1.0	0.7621
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10041437 [exp]	13.7	0.7332
AT4G22390			F-box associated ubiquitinatio...		Lus10030826 [exp]	15.2	0.6991
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10042680 [exp]	15.5	0.7275
AT1G27000			Protein of unknown function (D...		Lus10013269 [exp]	24.4	0.5607
					Lus10003489 [exp]	28.0	0.6163
AT5G13920			GRF zinc finger / Zinc knuckle...		Lus10020975 [exp]	30.6	0.5692
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	31.5	0.6807
					Lus10040759 [exp]	33.6	0.6328
AT5G44620		CYP706A3	"cytochrome P450, family 706, ...		Lus10024575 [exp]	34.4	0.6168

Compare expression of checked genes

Lus10028843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.