Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59810 149 / 5e-41 ATSBT5.4 Subtilase family protein (.1) AT2G04160 143 / 5e-39 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 114 / 8e-29 Subtilisin-like serine endopeptidase family protein (.1) AT1G20160 113 / 2e-28 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT5G58840 111 / 7e-28 Subtilase family protein (.1) AT5G03620 110 / 1e-27 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 109 / 4e-27 Subtilase family protein (.1) AT5G59130 107 / 2e-26 Subtilase family protein (.1.2) AT5G59090 107 / 2e-26 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59190 106 / 4e-26 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039087 [exp] 151 / 1e-41 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 149 / 6e-41 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 146 / 6e-40 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 143 / 7e-39 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 123 / 7e-32 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10032425 [exp] 123 / 7e-32 AT5G59810 607 / 0.0 Subtilase family protein (.1) Lus10014591 [exp] 122 / 2e-31 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10023048 [exp] 122 / 2e-31 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10032096 [exp] 119 / 3e-30 AT1G20160 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171600 [exp] 155 / 5e-43 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 152 / 5e-42 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 144 / 3e-39 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468900 [exp] 144 / 4e-39 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.006G001600 [exp] 144 / 4e-39 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.001G469000 [exp] 140 / 8e-38 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.005G067200 [exp] 135 / 4e-36 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102100 [exp] 128 / 1e-33 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 124 / 4e-32 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 122 / 1e-31 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028844 pacid=23177134 polypeptide=Lus10028844 locus=Lus10028844.g ID=Lus10028844.BGIv1.0 annot-version=v1.0 ATGTTCTCTGGAGAAAGACGTCCAAGAAGGCCGAGAAGCACGTCACTCGCCCCTCTGGTCTCTGGAAGGCGGCCAAGTTTGGCGAAGATGTCATCATCGC CAACTTCGATTTCGGTTCGCCATCTGTTCATTCGGGTTTGGCCTGAATCACAGAGCTTCGCCGATGATGGCTACGGCCCAGTGCCATCCAGGAAGCTAAT CGGTGCTCGATATTTCAACAAGGGAATCCTGGAGGTGGGAGGAGCCTGCGCCGCCGTAGATTTTCCGATCGATTTGTACAGCAGCCGCGACTTCTGCGCA TTTGAAGCTGCGATCTCTGACGACGTGGATGTCCTGTCCGTCTCCCTCGGCGGCCAGGGAAAAATTGACTTCTTCGAGGATGCTTTAGCCATCGGCTCTT TTCACGCGGTTATGGCAGGGATTCCCTTCGTTGCCGCGACGGGAAACGACGGGCCAGGGCTCGGAACGGTAGTCAACGTTGCTCCCTGGATCCTGACCGT TTCTGCTAGCACGATTGACAGGGCGTTCGACACTTCGGTTGTGCTCGGAAACGGACTCAGAATCAGGGGAACCAGCACGGCTGAGACTCTGGCGGAGCAC AAATTCTACCCTCTGATGAGTGATGCAGACGCCAGGCTTCCGAATTCGACCGTTCAGGATGCCTTGCTCGGTAAACCAGGGGGATTGGATCCTGGCAAGG GGAAAGGCAAAATCCTGCCGTTTTCGAGAGGCTAG
AA sequence Show only first row Show all	>Lus10028844 pacid=23177134 polypeptide=Lus10028844 locus=Lus10028844.g ID=Lus10028844.BGIv1.0 annot-version=v1.0 MFSGERRPRRPRSTSLAPLVSGRRPSLAKMSSSPTSISVRHLFIRVWPESQSFADDGYGPVPSRKLIGARYFNKGILEVGGACAAVDFPIDLYSSRDFCA FEAAISDDVDVLSVSLGGQGKIDFFEDALAIGSFHAVMAGIPFVAATGNDGPGLGTVVNVAPWILTVSASTIDRAFDTSVVLGNGLRIRGTSTAETLAEH KFYPLMSDADARLPNSTVQDALLGKPGGLDPGKGKGKILPFSRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	0	1
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	2.6	0.9998
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	3.7	0.9998
					Lus10005830 [exp]	4.6	0.9998
AT3G57440			unknown protein		Lus10042062 [exp]	5.0	0.9847
					Lus10009618 [exp]	5.3	0.9998
AT1G08790			Protein of unknown function (D...		Lus10006560 [exp]	5.7	0.9723
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	5.9	0.9998
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	6.5	0.9998
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	7.0	0.9998
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10029358 [exp]	7.3	0.9815

Compare expression of checked genes

Lus10028844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.