Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47670 180 / 9e-57 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) AT1G21970 178 / 2e-55 CCAAT AtLEC1, NF-YB9, EMB212, LEC1 NUCLEAR FACTOR Y, SUBUNIT B9, LEAFY COTYLEDON 1, EMBRYO DEFECTIVE 212, Histone superfamily protein (.1) AT4G14540 151 / 5e-46 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT2G38880 150 / 6e-46 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT5G47640 150 / 4e-45 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT2G37060 146 / 6e-44 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT2G13570 147 / 1e-43 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT3G53340 145 / 2e-43 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G47810 135 / 1e-39 CCAAT NF-YB5 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) AT1G09030 124 / 9e-36 CCAAT NF-YB4 "nuclear factor Y, subunit B4", nuclear factor Y, subunit B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008981 [exp] 302 / 2e-103 AT5G47670 193 / 5e-61 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10008980 [exp] 193 / 7e-61 AT5G47670 168 / 6e-52 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10003909 [exp] 176 / 2e-54 AT5G47670 221 / 1e-72 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10001914 [exp] 173 / 3e-53 AT5G47670 218 / 2e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10008979 [exp] 157 / 8e-48 AT5G47670 134 / 1e-39 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10008978 [exp] 156 / 2e-47 AT5G47670 147 / 1e-44 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Lus10022514 [exp] 150 / 3e-45 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10016616 [exp] 150 / 3e-45 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10001751 [exp] 150 / 6e-45 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G005600 [exp] 177 / 4e-55 AT5G47670 216 / 6e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.006G005000 [exp] 176 / 7e-55 AT5G47670 216 / 7e-71 "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2) Potri.006G005500 [exp] 152 / 5e-46 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 152 / 6e-46 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.008G210300 [exp] 149 / 2e-45 AT2G47810 176 / 1e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.016G006100 [exp] 150 / 4e-45 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.008G044800 [exp] 149 / 6e-45 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.014G132600 [exp] 148 / 1e-44 AT2G47810 186 / 9e-61 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1) Potri.010G216600 [exp] 147 / 2e-44 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.016G085000 [exp] 147 / 3e-44 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10028845 pacid=23177236 polypeptide=Lus10028845 locus=Lus10028845.g ID=Lus10028845.BGIv1.0 annot-version=v1.0 ATGAACCCACCACCTCGGCAGCAGCAGAATCCTCCTCCTCCGGGGGGAGGAGGAGGAAGAGGACGTCCGTTGCAGCTGAGAGAGCAGGACCAGTACATGC CGATAGCCAACGTCATCAGGATAATGCGGCGGATCCTTCCGCCGCACGCCAAGATCTCCGACGACGCCAAGGAGACCATCCAGGAGTGCGTGTCGGAGTA CATCAGCTTCGTCACAGGCGAAGCCAACGAGCGCTGCCAGCGCGAGCAGAGGAAGACCGTCACCGCTGATGACGTCTTGTGGGCCATGGGGAAGCTAGGG TTCGACAACTACGTCGAACCACTTTCATTGTACCTCGCCAGGTACCGTGAGACCGAGGGTGACCGTGCTGCGTACCGTGACCCTAACTTGCTTCTCAAGC GAAGTGCTGCTGCTGCTCATCATGATCATCATCGTCAGGATTTTGGGCCCTCCATGATAATGCCTCCTGCTGCTCCTCCCCTTGCTCCTAATTTCCAAAT GCAGCAGCAGTGTCATAATACTAATTTCCAGATGCAGCAGCAGGGTCCTAATGGTAATTTCCAGATGCAGCAGCAGGGAGATCATAACAATAATATTAAC CAGGGAATGTATGATGCTGCTGCTGCTGCTGGTGGCTACTACAGGGAACCGTTGTTGTTAGGGTCCGGTTCGGGTCAGGGGAGCCACAGCGGCGCCGGCG GGGGTGAAGATGGAGGGGCTGGGATGCCCAACTTTGATCATCTGTATTCCCAGTTCAAATAA
AA sequence Show only first row Show all	>Lus10028845 pacid=23177236 polypeptide=Lus10028845 locus=Lus10028845.g ID=Lus10028845.BGIv1.0 annot-version=v1.0 MNPPPRQQQNPPPPGGGGGRGRPLQLREQDQYMPIANVIRIMRRILPPHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTVTADDVLWAMGKLG FDNYVEPLSLYLARYRETEGDRAAYRDPNLLLKRSAAAAHHDHHRQDFGPSMIMPPAAPPLAPNFQMQQQCHNTNFQMQQQGPNGNFQMQQQGDHNNNIN QGMYDAAAAAGGYYREPLLLGSGSGQGSHSGAGGGEDGGAGMPNFDHLYSQFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10028845 [exp]	0	1
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10040424 [exp]	1.0	0.7952
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Lus10002042 [exp]	1.4	0.7777
AT3G17152			Plant invertase/pectin methyle...		Lus10017077 [exp]	1.7	0.7312
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	6.3	0.7139
AT1G07060			unknown protein		Lus10031856 [exp]	7.5	0.5664
AT5G12390		FIS1B	FISSION 1B, Tetratricopeptide ...		Lus10009707 [exp]	8.8	0.7009
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10021723 [exp]	10.2	0.6943
					Lus10032733 [exp]	11.7	0.6784
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	12.2	0.7104
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	13.4	0.7104

Compare expression of checked genes

Lus10028845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.