Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04830 203 / 3e-66 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008971 [exp] 299 / 2e-103 AT5G04830 230 / 2e-77 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10001507 [exp] 42 / 0.0003 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241700 [exp] 205 / 1e-66 AT5G04830 264 / 3e-91 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.008G017701 [exp] 108 / 7e-30 AT5G04830 134 / 3e-41 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028847 pacid=23177164 polypeptide=Lus10028847 locus=Lus10028847.g ID=Lus10028847.BGIv1.0 annot-version=v1.0 ATGCTTCCCAGAGAGAGTTTGCAGACAAGGCTTTGTCACTCCGGTGCTACCCGGTTACTGTCGACAAGATTAGCTACTGTAGACGAGAACCGATTGAAGA TGCCTCTTGTTGTGAGGGTCTTTGAGTATGCCGTCTCCCATGGCACAAAACATTTGATGTTGGACCTGGATTATGATATTGACGATACCGAAGACTATAT ATTCCCTAAATCCTATGGATGTGATCTTGAAACTCTGACTTACGCACTTTCGGAATCGACAATCGATTTCGATCTTTTGGTTTCCAAGCTAAGGTATGCA TCGAGGGCTACGGCTGCAGACTTCGAAATATATGCTGAAGATGCTTCCTTTGAAGATCCCCTCATGTCTGCTCATGGGGCGAAGAAGATCAAATCAGCAT TCTATTCAATTCCTAAGGTGTTCAAAGAGTCCCAGATCGTGAATTACACTGTCCAAGAGAACCAAGTATCACCTGGAAAGCAGGAGGTACTGATCGACAA CAAGCAGCAGTACGTTATCTTTGCAAAAAGTATAGAGATGATCTCACTCATCAAGCTCCAAGTCGAGAACGGCAAGATCATCCGCCATGAAGACTGTTGG AAGAAGAAGCCAATTGAGAACAGAGACACAGCAAAGCTAAGGATGATTGGGCGGCTCAAGGAGATTGTCAGAAGAGGATCCATGTTTGCTACTCATGCTG CCATGGGCTTTGGTCAGGACCCACCGGCCCAAGCCCAAGCCCACACGCCATCCACCTAA
AA sequence Show only first row Show all	>Lus10028847 pacid=23177164 polypeptide=Lus10028847 locus=Lus10028847.g ID=Lus10028847.BGIv1.0 annot-version=v1.0 MLPRESLQTRLCHSGATRLLSTRLATVDENRLKMPLVVRVFEYAVSHGTKHLMLDLDYDIDDTEDYIFPKSYGCDLETLTYALSESTIDFDLLVSKLRYA SRATAADFEIYAEDASFEDPLMSAHGAKKIKSAFYSIPKVFKESQIVNYTVQENQVSPGKQEVLIDNKQQYVIFAKSIEMISLIKLQVENGKIIRHEDCW KKKPIENRDTAKLRMIGRLKEIVRRGSMFATHAAMGFGQDPPAQAQAHTPST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	0	1
AT1G54070			Dormancy/auxin associated fami...		Lus10013180 [exp]	2.8	0.7516
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	3.5	0.7959
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	4.0	0.7814
					Lus10031263 [exp]	4.6	0.7247
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	6.2	0.7814
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	6.5	0.7528
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	9.4	0.7788
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014438 [exp]	19.1	0.7178
					Lus10021106 [exp]	23.7	0.6926
AT1G68140			Protein of unknown function (D...		Lus10025356 [exp]	24.7	0.7287

Compare expression of checked genes

Lus10028847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.