Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26140 1072 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 1030 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 1023 / 0 BGAL4 beta-galactosidase 4 (.1) AT3G13750 1014 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 940 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT1G45130 924 / 0 BGAL5 beta-galactosidase 5 (.1) AT2G28470 828 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT5G63810 769 / 0 BGAL10 beta-galactosidase 10 (.1) AT2G32810 729 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G20710 680 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008974 [exp] 1466 / 0 AT4G26140 1068 / 0.0 beta-galactosidase 12 (.1.2) Lus10006009 [exp] 1263 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10040557 [exp] 1162 / 0 AT4G26140 1001 / 0.0 beta-galactosidase 12 (.1.2) Lus10000701 [exp] 1009 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 1001 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 989 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 938 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 929 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10024292 [exp] 926 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144500 [exp] 1113 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 1043 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1030 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 952 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 952 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 952 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 810 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 782 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.011G044300 [exp] 760 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 744 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10028848 pacid=23177149 polypeptide=Lus10028848 locus=Lus10028848.g ID=Lus10028848.BGIv1.0 annot-version=v1.0 ATGTTGAGCCACAGCAGCCTGGCTCTGTTTTCATTACTTCTGTTGCTATGTTCTTCTTCTTCTCTCTGGGTTTCTCCAGTCACAGCTGCCGTCACTTACG ACGGAAAAGCTATCGTCGTCAATGGGCAGCGTAGGATTCTCATCGCTGGCTCTATTCACTACCCCAGAAGTACCCCTGAGATGTGGCCTGATCTGATACA GAAGGCCAAAGATGGAGGCCTGGATGTTATTCAGACTTACGTTTTCTGGAATGGCCACGAGCCTTCTCCTGGGAATTATTATTTCGAGGATAGGTTCGAC CTGGTGAAGTTCGTGAAGGTGGTTCAGCAAGCAGGCCTATACGTTAATCTCCGAATCGGTCCTTACGCTTGTGCAGAATGGAACTTTGGAGGATTCCCTG TTTGGCTAAAGTATGTCCCTGGAATGTCTTTCAGAACTGACAATGAACCGTTCAAGGCGGCTATGCAAAAGTTCACAGAGAAAATCGTCAACATGATGAA GCAAGAAGAGCTCTTTGAACCACAGGGAGGCCCAATTATTCTCTCCCAGATAGAGAACGAGTACGGGCCGATAGAATGGGAGCTGAAAGCACCGGGGAAA GCATACGCACAGTGGGCAGCTCAGATGGCGGTGGGACTCAACACAGGAGTTCCATGGATTGCGTGCAAGCAAGAGGATGCCCCTGACCCTCTGATAGACA CCTGCAACGCGTATTACTGCGAGAAATTCACACCAAACAAGTCCTATAAGCCTAAAATGTGGACTGAAGCTTGGACCGCTTGGTTCACATCATGGGGGAA CCCAGTGTTATACAGACCGGCAGAGGATCAGGCATTTTCCGTTCTCAAGTTCATTCAGAGTGGTGGTTCGTACGCGAATTATTACATGTACCATGGTGGA ACGAATTTCGGTAGAACTGCGGGTGGTCCCTTTGTAGCAACCAGCTATGACTACGACGCTCCTCTTGATGAATATGGCTTAACAAATGACCCAAAGTACA CACATCTGAAACACATGCATAAGGCAATCAAGCAAAGTGAGAAGGCTTTAGTTTCTGCTGATGCCACAGTAACATCATTAGGGACAAATCAAGAGGCTCA TGTGTATAGTTCAAGTTCAGGGTGTGCAGCGTTCCTAGCAAACTATGATGTGAGTTACTCGGTGAAAGTGAACTTTGGAAATGGCCAGTATGATCTCCCA GCTTGGTCTATCAGCATACTGCCTGATTGCAAAACGGAAGTTTACAACACTGCAAAGGTGGGGAGCAGTCAGGAAACCGAAAAGGTTTTAGCTTCTAGAG TGCACAAGAAGATGACTCCTCTGGGCGGATTTACATGGGACTCATACATCGATGAAGTTGCTTCTGGTTTCGCCAGCGATACAACCACCGAGGATGGGTT GTGGGAACAGCTATACATGACTAAGGATTCTTCTGATTACCTTTGGTACATGCAAGATGTTAAGATAGGAAGTGATGAAGCATTCCTGACGAATGGAAAA GACCCGTTTCTCAATGTCCAATCAGCAGGACATTTTTTGAATGTTTTTATCAATGGAAAGCTCATCGGTAGTGCTTATGGTAGCAACGACAATCCAAAGT TGACCTTCAGCCAGAGTGTGAAGCTAAATGTTGGTGTTAACAAGATTGCATTATTGAGCGCTTCTGTTGGTCTTGCGAATGTTGGCTTACACTTCGAGAA TTACAATGTTGGAGTTCTTGGACCAGTGACACTGACGGGATTGAATCAGGGGACAGTTGATATGACAAAATGGAAATGGTCTTACAAGGTTGGTGTACAA GGTGAAAAATTGCAGCTTAATACTATTGCGGGAAGTTCATCTGTTGAATGGGTAAAGGGATCGATGTTAGCTAAAAAGCAGCCATTAACATGGTACAAGT CAACTTTCAATGCACCGGAAGGGAATGATCCAGTAGCTCTGGACATGATCAGCATGGGAAAGGGCCAGATATGGATTAATGGTCAGGGCATAGGGCGTTA CTGGCCGGCATATACTGCGCAAGGAAACTGCGGTGGCTGTTCTTACGGCGGATATTTCACTGAGAAGAAATGTCTCACTGGTTGTGGACAGCCTACACAA AGATGGTATCATGTTCCGCGGTCATGGCTGAAACCAACAGGGAACTTACTGGTTGTGTTTGAAGAATGGGGAGGGGATCCCACTGGAATTTCTATGGTGA AAAGAACTTTGCCAGGAAAGTGA
AA sequence Show only first row Show all	>Lus10028848 pacid=23177149 polypeptide=Lus10028848 locus=Lus10028848.g ID=Lus10028848.BGIv1.0 annot-version=v1.0 MLSHSSLALFSLLLLLCSSSSLWVSPVTAAVTYDGKAIVVNGQRRILIAGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRFD LVKFVKVVQQAGLYVNLRIGPYACAEWNFGGFPVWLKYVPGMSFRTDNEPFKAAMQKFTEKIVNMMKQEELFEPQGGPIILSQIENEYGPIEWELKAPGK AYAQWAAQMAVGLNTGVPWIACKQEDAPDPLIDTCNAYYCEKFTPNKSYKPKMWTEAWTAWFTSWGNPVLYRPAEDQAFSVLKFIQSGGSYANYYMYHGG TNFGRTAGGPFVATSYDYDAPLDEYGLTNDPKYTHLKHMHKAIKQSEKALVSADATVTSLGTNQEAHVYSSSSGCAAFLANYDVSYSVKVNFGNGQYDLP AWSISILPDCKTEVYNTAKVGSSQETEKVLASRVHKKMTPLGGFTWDSYIDEVASGFASDTTTEDGLWEQLYMTKDSSDYLWYMQDVKIGSDEAFLTNGK DPFLNVQSAGHFLNVFINGKLIGSAYGSNDNPKLTFSQSVKLNVGVNKIALLSASVGLANVGLHFENYNVGVLGPVTLTGLNQGTVDMTKWKWSYKVGVQ GEKLQLNTIAGSSSVEWVKGSMLAKKQPLTWYKSTFNAPEGNDPVALDMISMGKGQIWINGQGIGRYWPAYTAQGNCGGCSYGGYFTEKKCLTGCGQPTQ RWYHVPRSWLKPTGNLLVVFEEWGGDPTGISMVKRTLPGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	0	1
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	1.4	0.9771
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	1.7	0.9800
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	2.4	0.9706
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10025006 [exp]	2.8	0.9641
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10025016 [exp]	3.0	0.9533
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	3.9	0.9636
					Lus10002304 [exp]	5.3	0.9375
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	6.3	0.9444
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	6.5	0.9600
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10021725 [exp]	6.7	0.9252

Compare expression of checked genes

Lus10028848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.