Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52490 356 / 1e-110 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 282 / 1e-81 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 262 / 8e-75 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 258 / 4e-73 Clp amino terminal domain-containing protein (.1) AT4G30350 196 / 4e-52 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 132 / 2e-32 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G29970 130 / 8e-31 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 125 / 2e-29 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G74310 85 / 1e-16 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 49 / 1e-05 CLPB2 casein lytic proteinase B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008970 [exp] 1151 / 0 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 351 / 1e-107 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016966 [exp] 271 / 2e-78 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 247 / 3e-69 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 241 / 4e-67 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 179 / 1e-46 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040206 [exp] 118 / 7e-27 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10020886 [exp] 113 / 2e-25 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 111 / 7e-25 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017600 [exp] 470 / 6e-154 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G241600 [exp] 466 / 4e-152 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 366 / 5e-114 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 338 / 2e-103 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 311 / 2e-92 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G073800 [exp] 301 / 8e-89 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 246 / 5e-69 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 244 / 3e-68 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 136 / 1e-32 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 129 / 2e-30 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Lus10028849 pacid=23177190 polypeptide=Lus10028849 locus=Lus10028849.g ID=Lus10028849.BGIv1.0 annot-version=v1.0 ATGAGACCAGGAATATGCAGCATACAGCAAGGGCTTACTCCAGAGGCAGCAGGGATAGTGAAGCAAGCACTAACCTTAGCAAGACGGCGTGGCCATGCCC AAGTCACTCCTCTCCACGTAGCCAGCACTATGCTTGCTTCCCCAGGCGGCCTTTTCCAGCTAGCCTGTCTCCAATCCCACTCCCACCCTCTCCAATCCAA AGCACTTGAGCTCTGCTTCAATGTTTCCCTCAACCGTCTCCCTACTGCCTCAACTTTCCTGAGTGGCCCGCCACACCGATCCTCTGGTTACCCTTCCCTC TCCAATGCGTTGGTTGCTGCTTTCAAGCGTGCTCAGACTCACCAGCGACGTGGCTCTGTCGACAATCAGCAGCAGCCGTTTTTAGCTGTGAAGATTGAGG CTGAGCAGCTTGTCATCTCCATCTTAGATGATCCTAGTGTCAGTAGAGTCATGAGGGAAGCCGGGTTCTCCAGCACCTATGTCAAGAACAGAGTTGAGCA GGCAGTCAACACTGGTGGTGATAACAACAAGCCTCAACCGATGAAGTCCCTTTCCAATTTCGGACATCAGCATCGGCAGAAGCAGCAGCAGCAGTTTAGG ATACCAAAGCTGGCGCCTTTGGATCATTACAATGTTAATTTTGAGGATGTAAAGGCTGTTCTGAACACAATGGGGGGAAATAATAGGAGGAACATTGTGG TGACAGGAGAGTGTATAGATACTAGTGAGGCAGTGGTTCGAGCTGTGATGGACAATGTGGAGAGAGGGCTAGTCCCTGTGGAGTTGAGGTCTGCGCGGTT TGTGAGCCTTCAACTCTTCTCTCTATGTAGTCTATCGAAGGAGGAGATTGATATGAAGATTATGGAGTTGAGGTGTAATTACATAAAGAACAGTAGTGGA TCATCCAAAGGGGTTATTCTGTATGTGGGAGATCTTAACTTGGCCGCTGAGTTCTGGTCTAACTACGGGGAGCAAAGCAGATACATGAGCAGTATCTTGT ACTACAGATCCATGGAGTACATAATCATGGAGATCAAGCGATTGGTGAGGGAGAATAGTGAAGCTGGGAAGTTGTGGGTGTTGGGGATTGCTTCTTTCCA GACTTACATGAAGTGCAAAGCAGGGCATCCTTCTCTTGAGACTATGTGGGAGCTTTTTCCACTGACTGTTCCAGTTGGCAGTCTCAGCCTTAGCCTCAAT CTCAACAGTGAACTGGACACTCCAAGAAGCAAAGTATTTCGAAGCAATTATGAAGGTAATTTTCAAAAGAGTGCTTCCACAACACCAACCTCCACCCCAA TCTCCAACTTGCCTCCTTGGCTCCAACAGTGCAAGGAGGACACTATTGCTGCTGAAGCAAGGAGTAACGACAGTACAAATGCCGCCACTGAAGAGAAAGT ATTCACCTTTTTCGACATCTTCAAACCAAACAAGCGATCCCTTCACCAAACCCCTGACAGTAGTAACTTAAGCACAAGTTTTAGACTGGATGATACCAAA CCAGACCTTCTATCCAACCCAAACTCCAGCCCCAACTCTGCTTCCTCAAGCGAAGCAAATGACGACAGAGAAGATTACCTAGAGAGCTTCAAGGAGTTCA ACGGAGAGAACCTGAAGATCCTCTGTAGTGCTCTGGAGCAGAAAGTCCCGCAACAAAAAGAGATCATCTCAGAAATAGCAACTGCAGTCCTGGAGTGCAG GTCAGGAATGAACAGAAGAAATTTAAGCAATTGCAACAACAACAGAGATGAACAAAGAGAAGACACTTGGCTGCTATTCTCTGGAGCCGATCCACAAGGC AAAGAGAAGGTTGCAAGAGAGCTAGCTAGAGTTGTGTACGGTAGCAGCCAAACCAGCTTCGTAACCATTAACAAATTGCCAATAGCCTCGACAACTGAGC GTGCGTCGTCAAGCAGCGGAGAATGCGTTAATGATGATGATTTGGCTGCTGGAGAATATCTAAAACAGTTCGGCCTGGCCCTGAATGAGAATCCTCACAG GGTGTTTTTCTTTGAGGACTTCCATCGAACAGGTTGTTGGAGGCGTGTTGAAAAGGGCATCAAGAAAGCCATCCGAACTGGAACTGCGAGACTCCCCGGA GGAGAAATTGTGCCCCTAAAGGACGCCATTGTTGTCCTAAGCTGCAACGACTCCCAATCGTCATCCTCATCTCTCAGAAGAAAGCGGAAGCGTGGCGATC AAGCACTTCTTCTGTCGCTAGACTTGAATATGGCCATTGAAGGTGGCGCTGAAGACAGTGGAGATGACCTCAACGATGATTATGAGCATTCCATTGATCA ACAGAGGGATCCGATCGTGGAGTTAGTGGACAGAAGAATTGTTTTCAAAGTTCATGATCTTGGTCAATAG
AA sequence Show only first row Show all	>Lus10028849 pacid=23177190 polypeptide=Lus10028849 locus=Lus10028849.g ID=Lus10028849.BGIv1.0 annot-version=v1.0 MRPGICSIQQGLTPEAAGIVKQALTLARRRGHAQVTPLHVASTMLASPGGLFQLACLQSHSHPLQSKALELCFNVSLNRLPTASTFLSGPPHRSSGYPSL SNALVAAFKRAQTHQRRGSVDNQQQPFLAVKIEAEQLVISILDDPSVSRVMREAGFSSTYVKNRVEQAVNTGGDNNKPQPMKSLSNFGHQHRQKQQQQFR IPKLAPLDHYNVNFEDVKAVLNTMGGNNRRNIVVTGECIDTSEAVVRAVMDNVERGLVPVELRSARFVSLQLFSLCSLSKEEIDMKIMELRCNYIKNSSG SSKGVILYVGDLNLAAEFWSNYGEQSRYMSSILYYRSMEYIIMEIKRLVRENSEAGKLWVLGIASFQTYMKCKAGHPSLETMWELFPLTVPVGSLSLSLN LNSELDTPRSKVFRSNYEGNFQKSASTTPTSTPISNLPPWLQQCKEDTIAAEARSNDSTNAATEEKVFTFFDIFKPNKRSLHQTPDSSNLSTSFRLDDTK PDLLSNPNSSPNSASSSEANDDREDYLESFKEFNGENLKILCSALEQKVPQQKEIISEIATAVLECRSGMNRRNLSNCNNNRDEQREDTWLLFSGADPQG KEKVARELARVVYGSSQTSFVTINKLPIASTTERASSSSGECVNDDDLAAGEYLKQFGLALNENPHRVFFFEDFHRTGCWRRVEKGIKKAIRTGTARLPG GEIVPLKDAIVVLSCNDSQSSSSSLRRKRKRGDQALLLSLDLNMAIEGGAEDSGDDLNDDYEHSIDQQRDPIVELVDRRIVFKVHDLGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	1.0	0.9490
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	1.4	0.9394
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	3.5	0.9320
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	3.9	0.9189
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	4.5	0.9197
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	5.2	0.8865
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	5.3	0.8958
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	6.9	0.9138
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10039641 [exp]	7.1	0.8827
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	8.5	0.8808

Compare expression of checked genes

Lus10028849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.