Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04810 689 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G53700 193 / 3e-54 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 186 / 1e-51 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63070 182 / 2e-51 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G41170 181 / 2e-51 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G21222 185 / 4e-51 protein kinase family protein (.1) AT1G05670 182 / 3e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09900 179 / 3e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 178 / 2e-49 RPF2 rna processing factor 2 (.1) AT5G64320 179 / 3e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008969 [exp] 850 / 0 AT5G04810 1121 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10043434 [exp] 723 / 0 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10034149 [exp] 722 / 0 AT5G04810 1157 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012328 [exp] 185 / 2e-51 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 186 / 3e-51 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 186 / 5e-51 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10039056 [exp] 184 / 5e-51 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 183 / 1e-50 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 180 / 5e-50 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017400 [exp] 710 / 0 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G241300 [exp] 707 / 0 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G050500 [exp] 201 / 7e-58 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G013300 [exp] 201 / 3e-57 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G117600 [exp] 194 / 1e-56 AT1G12700 330 / 1e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 196 / 3e-56 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 195 / 2e-55 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G109500 [exp] 193 / 3e-55 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050300 [exp] 192 / 8e-55 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 192 / 1e-54 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028850 pacid=23177267 polypeptide=Lus10028850 locus=Lus10028850.g ID=Lus10028850.BGIv1.0 annot-version=v1.0 ATGGAAATTAGCAAATTGATGGAACTTGATGGGATAAGACATAACATGAAGACATATTCCATGTTGATCAATGGATTCCTGAAGTTGAAGGATTGGGCAA ATGCATTTGCAGTATTTGAGGATGTTGTTAAAGACGGTCTGAAGCCGGATGTGGTGCTATATAATAACATAATTCAAGCATTCTGTTGTATGGGAAATTT CGATCGCGCCCTCAAGGTGGTCAATCAAATGCTCAAGGAAAGGCATACACCAACCACGCGTACATTTATGCCCATCATCCATGCATTTGCAAGGGCCGGG GACATGAGAGGAACCCTTGAAACTTTTTATATGATGAGACGGAGTGGGTGCATTCCAACTGTGCACACTTTCAACTCGTTGATCCTTGGTCTTGTCGAGA AGCGTAAGATGGAAAGGGCGGTGGCAATATTGGATGAGATGGCACTAGCAGGTGTAAATCCAAATAAGTATACATACACAACCATCATGCATGGTTTTGC TTCGCTAGGTGACACCAGCAAAGCTTTTGAGTATTTCACCAAACTGATACACGAAGGGCTAGACCCCGATGTGTTCACATATGAGGCACTGTTAAAGGCA TGCTGCAAGTCAGGGAGGATGCAAAGTGCTTTAGCAGTCACTAAAGAGATGAGTGCCCTGAACATTCCCAGAAACTGTTTCGTCTACAACATATTAATCG ACGGATGGGCGCGAAGAGGTGACGTATGGGAAGCTGCTGACCTTATGCAACAAATGAAACAAGAAGGAGTCCGGCCTGACGTACACACTTATACTTCGTT TATAAACGCTTGCAGCAAGGCTGGTGATATGGCGAGAGCAATGAACACAATGCAAGAAATGGCAGCCTACGGAGTGAAGCCAAATGTGAAAACATACACT ACACTAATCTACGGCTGGGCTCGAGGGTCTCTCCCCGAGAAAGCATTGGGATGCTTCGAACAAATGAAGTCCGAGGGACTGAAGCCTGACAAGGCTGTAT ATCATTGCCTGATGACATCACTTCTCTCGAGGGCTACTGTGGCTGAGCCATACATTTACGCTGCGATTCTGTCGATATGCAGAGAGATGGTGGAATCCGA GTTGACTGTTGACATGGGTACCGCGGTCCACTGGTCCAAGTGTTTGTGCAAAATTGAGAGAAGTGGTGGAGAGATCACCAGAGCTCTGCAGAAAACCTTC CCTCCGGATTGGAGTGCTCGCCATACTCTCGTCTTGAGTTCTGAATCAGGTATGGATGATGATGATGACGAACTGGACAATGCTGGCCAAAACCGTAAAG ATTCAGCAACAGGCGATGGCGTTTCGGAGCAAAGATTGTTAGGTTCAGAATGCTTTCAGTTGTAG
AA sequence Show only first row Show all	>Lus10028850 pacid=23177267 polypeptide=Lus10028850 locus=Lus10028850.g ID=Lus10028850.BGIv1.0 annot-version=v1.0 MEISKLMELDGIRHNMKTYSMLINGFLKLKDWANAFAVFEDVVKDGLKPDVVLYNNIIQAFCCMGNFDRALKVVNQMLKERHTPTTRTFMPIIHAFARAG DMRGTLETFYMMRRSGCIPTVHTFNSLILGLVEKRKMERAVAILDEMALAGVNPNKYTYTTIMHGFASLGDTSKAFEYFTKLIHEGLDPDVFTYEALLKA CCKSGRMQSALAVTKEMSALNIPRNCFVYNILIDGWARRGDVWEAADLMQQMKQEGVRPDVHTYTSFINACSKAGDMARAMNTMQEMAAYGVKPNVKTYT TLIYGWARGSLPEKALGCFEQMKSEGLKPDKAVYHCLMTSLLSRATVAEPYIYAAILSICREMVESELTVDMGTAVHWSKCLCKIERSGGEITRALQKTF PPDWSARHTLVLSSESGMDDDDDELDNAGQNRKDSATGDGVSEQRLLGSECFQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028850 [exp]	0	1
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10011733 [exp]	11.7	0.8605
AT5G53920			ribosomal protein L11 methyltr...		Lus10022389 [exp]	13.0	0.8207
AT3G09250			Nuclear transport factor 2 (NT...		Lus10022605 [exp]	13.3	0.8423
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	14.5	0.8629
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10029044 [exp]	15.5	0.8312
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	19.4	0.8592
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	20.9	0.7703
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	21.3	0.8590
AT4G38490			unknown protein		Lus10025084 [exp]	25.3	0.7852
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Lus10006936 [exp]	27.7	0.8311

Compare expression of checked genes

Lus10028850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.