Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04810 301 / 5e-94 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09680 59 / 2e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 58 / 7e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G32630 57 / 7e-09 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G19610 57 / 1e-08 nucleotide binding;nucleic acid binding;RNA binding (.1) AT3G59040 57 / 2e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G01740 56 / 2e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G53680 54 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06400 55 / 5e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G62370 54 / 8e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008969 [exp] 549 / 0 AT5G04810 1121 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10034149 [exp] 352 / 1e-113 AT5G04810 1157 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10043434 [exp] 351 / 2e-113 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016726 [exp] 61 / 1e-10 AT5G61990 166 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 62 / 5e-10 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005058 [exp] 61 / 1e-09 AT3G59040 623 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027829 [exp] 60 / 2e-09 AT3G59040 703 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10006769 [exp] 57 / 6e-09 AT1G61870 326 / 7e-111 pentatricopeptide repeat 336 (.1) Lus10036020 [exp] 58 / 7e-09 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017400 [exp] 357 / 4e-115 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G241300 [exp] 356 / 5e-115 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G220300 [exp] 58 / 5e-09 AT3G59040 811 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G149600 [exp] 57 / 1e-08 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.001G319900 [exp] 52 / 3e-08 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.006G202000 [exp] 54 / 5e-08 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.004G147700 [exp] 55 / 6e-08 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 54 / 1e-07 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.001G361500 [exp] 54 / 1e-07 AT3G02650 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G137200 [exp] 54 / 2e-07 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028851 pacid=23177276 polypeptide=Lus10028851 locus=Lus10028851.g ID=Lus10028851.BGIv1.0 annot-version=v1.0 ATGGATATCCTTTCACTCTCTGCTACTTCCTCCTCCTTCCCTCATACCTCAACCCCATCTTCTCCCGCCGCCGGTAAAAGACCCACCGCCCCTCTCATTT CCTCCACTTCCGTCTCCTTCTCCGCCAAACCAACTCCGCCGCCGGAATTCAACAACTCAAATACCAGAACCCCTTCAGTCCCCCGCCCTCACTTACTCAC TCAATCACCTCCCATTCCCGATGACAAATCCCCTATCCCTTTCAAAAACCCAATACGATCCTCCCGCGCTGCTTCTCCCGCTTCTCACTCTCTTTCCTCC AAGCTCTGGCTCTCCAGCAAGCTATCTCCGCCTCCGCCGCCACCGCCGTCTCCACCTCCGCCGCGGCGGACCCGTGTTAAGAAAAAAGCCCCAACTTCTG TACCTCGGGAGGAGGTCCAAAAACCCGAATTGCGCGAGCAGGGGAAGATTTTCGTGGGGAATTTGCCCACGCGGATTAAGGAGCACGAATTGGTTGAGTT CTTCCAGCGATTCGGCCGGATCAAGAGCGTAATCCTGTGTCAAGGACGCAACGAGACGGAGAGGAATTCCGGATTTGGATTCGTTGTCTACGACGGAGCC ACTGCTGGGGAATCGGCAGCGAAAGCTGAGGAGTTTGATGGGATGGAGTTCCACGGGAGGGTTATCACGGTTAAGTTGGATGACGGGAGGAGTCTGAAAG ACAATGCGGAGGCTTACAAACCTAAGCGGCATCATCAGGAAAGGGACGGTTCGAGTAAGGCGTTGAGGAGGGTTTTAGATACGCAGCCGGAGAATTGGCA GGCGGTGGTTGATGCATTCGATAAGGTCAAGAATCCTTCCAGAAGGGAGTTTGGATGGATGGTGGGATATTACGCGAGGCGAGGAGATGTGCATCGAGCT AGACAAACTTTCGAAAGCATGCTAGCGAGGCGAATCGAACCCAGCTCTCATGTCTACACAAGCCTTGTACATGCTTATGCAGTTGGTAGAGACATGGAAG AAGCTCTGTCTTGCGTTCGGAAAATGAAGGAGGAGCGTGTCGAGTTGAGCTTGGTGACTTACAGCATTCTTGTTTCTGGATTCGCTAAAATTGGCAATGC TGAGTAA
AA sequence Show only first row Show all	>Lus10028851 pacid=23177276 polypeptide=Lus10028851 locus=Lus10028851.g ID=Lus10028851.BGIv1.0 annot-version=v1.0 MDILSLSATSSSFPHTSTPSSPAAGKRPTAPLISSTSVSFSAKPTPPPEFNNSNTRTPSVPRPHLLTQSPPIPDDKSPIPFKNPIRSSRAASPASHSLSS KLWLSSKLSPPPPPPPSPPPPRRTRVKKKAPTSVPREEVQKPELREQGKIFVGNLPTRIKEHELVEFFQRFGRIKSVILCQGRNETERNSGFGFVVYDGA TAGESAAKAEEFDGMEFHGRVITVKLDDGRSLKDNAEAYKPKRHHQERDGSSKALRRVLDTQPENWQAVVDAFDKVKNPSRREFGWMVGYYARRGDVHRA RQTFESMLARRIEPSSHVYTSLVHAYAVGRDMEEALSCVRKMKEERVELSLVTYSILVSGFAKIGNAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028851 [exp]	0	1
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10012201 [exp]	3.6	0.8709
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10025350 [exp]	4.0	0.8436
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10023240 [exp]	9.5	0.8250
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015108 [exp]	10.6	0.8592
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	14.0	0.8559
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10008969 [exp]	14.7	0.8437
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	18.6	0.8461
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	24.1	0.8494
AT5G07320		APC3	ATP/phosphate carrier 3, Mitoc...		Lus10032523 [exp]	25.0	0.8346
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	27.7	0.8030

Compare expression of checked genes

Lus10028851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.