Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 435 / 9e-149 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45580 432 / 2e-147 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G61040 425 / 7e-145 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45570 416 / 4e-141 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT1G33720 413 / 3e-140 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 405 / 5e-137 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33730 348 / 1e-116 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT5G07990 323 / 4e-105 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G52970 316 / 2e-102 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT4G12300 312 / 8e-101 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008935 [exp] 766 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 764 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 693 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 689 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 664 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 645 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 626 / 0 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10036079 [exp] 621 / 0 AT2G45550 481 / 5e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 617 / 0 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 563 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 553 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 452 / 1e-155 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 438 / 3e-150 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 437 / 1e-149 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 430 / 7e-147 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 427 / 9e-146 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 352 / 3e-116 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.007G084200 [exp] 337 / 7e-111 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 331 / 2e-108 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028852 pacid=23177296 polypeptide=Lus10028852 locus=Lus10028852.g ID=Lus10028852.BGIv1.0 annot-version=v1.0 ATGGACTTGTTACCAATCATCACCTGCTTGCTCTGCCTCCTCGCAACCTTGGCCATCCTCCGTTTCCTCTCCGACAAAACTCCGTCCAGACTCCCACCGG GCCCTTCCCGCCTTCCGATCATCGGCAACCTCCACAACCTAGGCGACAAACCCCATCAATCGCTGGCCCAACTTGCCAAGATTCACGGTCCCTTAATGAG CCTCAAGCTCGGCCAGGTCATCACAATCGTCGCTTCCTCTCCGACGGTAGCCAAAGAAATTCTCCAAAAGCACGACCAGGTCCTCGCCAACCGCCACCAT ATCCAAGCCTTTTGCGCGTGCGACCACCACGAATTTAGTGTAGCGTTGCTCCCCCTGGGATCCAAGTGGAGGAGCATCAGAAGAGTCTGCAACACGCATC TATTCACTACCCAGAAGCTGGATTCCAACCGGGAGATTCGGAGGAGGACGATTCAGGAGCTTCTTGAAAGTGTTCGACGAAAGGCCTCTGAGGGGAAGGC AGTGGATGTTGGCAGAGAGGCTTTCAGGGCGAGTTTTAGCGTTATGTCGATGATGGTTTTTTCGTTGGATCTGACGGACGAGGGTTCGGAGGATGTGATG GAGTTCAAAAGTGTTACGAGGGGTATAATGGATGAATGTGGGAAGCCGAACTTGGGAGACTATTTCCCGTTTCTCGGTGTTCTGGATTTGCAAGGCATAC AGAGGCGGGCGAGGAGTCTTAACGGCAAGGTGTTGAATCTATGTGTAAGGATAATTGAGGAACGGTTGAAGAATAGGAAGTCGGAAGGTTATGTAACTGG CAATGACATGTTGGATACTCTTCTCGACATTAATGAACAGAATGGCCAGGCTTCCATGGATCAAAATGCCATCAAACACTTGTTCTTGGATTTATTTGTT GTTGGAACTGATACAACTTCAAGGACATTAGAATGGGCTATGACCGAGTTACTACGCAGCCCCGACAAATTAGCTAAAGCTAGGGAGGAATTAAACCAAA CAATTGGAAAGGGGAATCATCTTCAGGAATCTGACATTTCGAGGTTACCTTATTTACAAGCAATAATCAAAGAGACCTTCAGACTGCATCCGGCCCTTCC TTTGTTAATTCCAAGGAATGCAGGATCCGATGTGGACGTTTGTGGATTCATGGTGCCAAAAGGAGCACAGATTATGATCAATGTGTGGGCTATGGGTAGA GATCCAACTATATGGGACAATCCAAACTCGTTCATGCCAGAGAGATTCATAGAATCCGAAATTGATGTTCGAGGGAACAGTTTCGAACTGATACCGTTCG GAGGTGGAAGAAGGATTTGTCTTGGATTGCCGTTGGCAATGAGGATGTTGCATATGGTGTTGGGTTCGCTGGTTCATTGGTTTGAGTGGAAGTTGGAAGA TGGTGTTGGCCCAACAAATTTCAATATGGAAGAGAAGTTTGGAATCACTTTACAAAAAGCTAAACCTTTGCTCGCTATTCCGAAGCTCACATAA
AA sequence Show only first row Show all	>Lus10028852 pacid=23177296 polypeptide=Lus10028852 locus=Lus10028852.g ID=Lus10028852.BGIv1.0 annot-version=v1.0 MDLLPIITCLLCLLATLAILRFLSDKTPSRLPPGPSRLPIIGNLHNLGDKPHQSLAQLAKIHGPLMSLKLGQVITIVASSPTVAKEILQKHDQVLANRHH IQAFCACDHHEFSVALLPLGSKWRSIRRVCNTHLFTTQKLDSNREIRRRTIQELLESVRRKASEGKAVDVGREAFRASFSVMSMMVFSLDLTDEGSEDVM EFKSVTRGIMDECGKPNLGDYFPFLGVLDLQGIQRRARSLNGKVLNLCVRIIEERLKNRKSEGYVTGNDMLDTLLDINEQNGQASMDQNAIKHLFLDLFV VGTDTTSRTLEWAMTELLRSPDKLAKAREELNQTIGKGNHLQESDISRLPYLQAIIKETFRLHPALPLLIPRNAGSDVDVCGFMVPKGAQIMINVWAMGR DPTIWDNPNSFMPERFIESEIDVRGNSFELIPFGGGRRICLGLPLAMRMLHMVLGSLVHWFEWKLEDGVGPTNFNMEEKFGITLQKAKPLLAIPKLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028852 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10035635 [exp]	3.7	0.8553
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016176 [exp]	7.8	0.8555
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10007021 [exp]	13.6	0.8083
AT3G09870			SAUR-like auxin-responsive pro...		Lus10023012 [exp]	15.0	0.7818
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10006804 [exp]	18.5	0.8106
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10040275 [exp]	20.5	0.8216
AT5G56860	GATA	GATA21, GNC	GATA, nitrate-inducible, carbo...		Lus10040556 [exp]	28.3	0.7698
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	37.0	0.7723
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	39.1	0.7721
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	45.3	0.7671

Compare expression of checked genes

Lus10028852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.