Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 274 / 3e-92 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 246 / 5e-81 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 244 / 2e-80 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 244 / 3e-80 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 241 / 4e-79 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 221 / 1e-71 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 196 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 186 / 6e-58 alpha/beta-Hydrolases superfamily protein (.1) AT1G08310 172 / 5e-53 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008968 [exp] 420 / 1e-149 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 354 / 7e-124 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 352 / 7e-123 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 324 / 5e-112 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 325 / 8e-111 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 318 / 1e-109 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 265 / 8e-89 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 258 / 7e-86 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 257 / 9e-86 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G021000 [exp] 287 / 6e-97 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 283 / 7e-96 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237700 [exp] 281 / 3e-95 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 281 / 5e-95 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 272 / 1e-91 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 242 / 8e-80 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 239 / 9e-79 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 211 / 9e-68 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 62 / 2e-11 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 56 / 3e-09 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028854 pacid=23177328 polypeptide=Lus10028854 locus=Lus10028854.g ID=Lus10028854.BGIv1.0 annot-version=v1.0 ATGGGGAAGTCAATGGGAGGGCAGGTGGTTTGGGGATGTTTGAAGTATATACCACACAGGCTGGCGGGGGCGGCGTTGGTGGCGCCGGTGATCAATTACT GGTGGCAGAGTTTTCCTGCGAGGATGAGGAAAGAGGCGTATAGGACGCAGCTGGTTCAAGACCAGTGGGCGCTGCGGGTGGCTCATTACGCGCCGTGGCT GAACTACTGGTGGAACACGCAGAAGATGTTCCCAGCCTCCGGGGTTATAGCTCGCAAGAGGGAGACACTTTCGGCACAGGATGCAGAGTTCATCTCGAAG CACGGCGACCGGCCTGACTACCTCAAGAAAGCAGCAACGCAACAGGGAGTGCACGAGTCGCTGCACAGGGACATGATGGTGGGGTTCGGAAAGTGGGAAT TCGATCCGATGGAGATCGAGAATCCGTTCCCGAATAACGAAGGATCCGTGCATCTGTGGCAAGGAGATGAAGATAGGAAGGTTCCGATAGAGTTGCAGCG TTACATTGCGAAGAAGCTGTTGTGGATTCAGTACCATGAGATTCCGGGAGGGGGACATATTCTTCTTTCCCCTCCGAAATTGATGGAGGATATACTCAGA TCTCTTCTGGCCAAACCACAAATCCAGACACATTACTAA
AA sequence Show only first row Show all	>Lus10028854 pacid=23177328 polypeptide=Lus10028854 locus=Lus10028854.g ID=Lus10028854.BGIv1.0 annot-version=v1.0 MGKSMGGQVVWGCLKYIPHRLAGAALVAPVINYWWQSFPARMRKEAYRTQLVQDQWALRVAHYAPWLNYWWNTQKMFPASGVIARKRETLSAQDAEFISK HGDRPDYLKKAATQQGVHESLHRDMMVGFGKWEFDPMEIENPFPNNEGSVHLWQGDEDRKVPIELQRYIAKKLLWIQYHEIPGGGHILLSPPKLMEDILR SLLAKPQIQTHY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028854 [exp]	0	1
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10028853 [exp]	1.0	0.8818
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Lus10009875 [exp]	6.0	0.7732
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	7.9	0.7951
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	18.4	0.7580
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10036578 [exp]	20.1	0.8006
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040099 [exp]	20.2	0.7805
AT5G53340			Galactosyltransferase family p...		Lus10032350 [exp]	22.4	0.7903
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	23.1	0.7640
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	33.9	0.7398
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	34.2	0.7764

Compare expression of checked genes

Lus10028854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.