Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21300 875 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G54250 580 / 0 GHMP kinase family protein (.1) AT2G38700 549 / 0 ATMVD1, MVD1 mevalonate diphosphate decarboxylase 1 (.1) AT3G03580 504 / 6e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 502 / 4e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 479 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 477 / 1e-150 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 481 / 3e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 472 / 2e-148 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 466 / 3e-147 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008967 [exp] 1649 / 0 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008966 [exp] 688 / 0 AT3G54250 668 / 0.0 GHMP kinase family protein (.1) Lus10043438 [exp] 649 / 0 AT3G54250 681 / 0.0 GHMP kinase family protein (.1) Lus10034147 [exp] 645 / 0 AT3G54250 674 / 0.0 GHMP kinase family protein (.1) Lus10013991 [exp] 501 / 6e-159 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 496 / 8e-158 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 497 / 3e-157 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 493 / 2e-156 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 492 / 2e-155 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156800 [exp] 1019 / 0 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G237900 [exp] 633 / 0 AT3G54250 688 / 0.0 GHMP kinase family protein (.1) Potri.008G021100 [exp] 628 / 0 AT3G54250 683 / 0.0 GHMP kinase family protein (.1) Potri.018G067500 [exp] 532 / 9e-170 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 516 / 4e-166 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 517 / 2e-163 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 500 / 2e-159 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 497 / 7e-157 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 494 / 4e-156 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 476 / 3e-150 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028855 pacid=23177211 polypeptide=Lus10028855 locus=Lus10028855.g ID=Lus10028855.BGIv1.0 annot-version=v1.0 ATGGCGGATAAGTGGGTGAGGATGGTGACAGCGCAAACTCCCACCAATATAGCAGTGATTAAGTACTGGGGAAAGAGGGATGAAGACTTGATTTTACCAG TCAATGACAGCATAAGTGTCACTTTGGATCCGGCTCATCTCTGCACTACCACTACTGTTGCAGTTAGTCCCACCTTTGATCAGGATCGGATGTGGCTTAA TGGAAAGGAGGTTTCCCTCTCTGGAGCCCGGTATCAGAATTGCTTACGAGAGATTCGTGCTCGTGCTCGTGATATCGAGGATGAGGAAAAGGGTATCAAG ATAGAGAAGAAGAATTGGGAAAAATTGCGTGTACATATAGTTTCGTATAACAACTTTCCTACTGCTGCTGGATTGGCTTCATCTGCAGCTGGATTTGCAT GCCTTGTTTTTGCCCTTGCAAAGCTAATGAATGCAAAAGAAGATAACAGTGATCTTTCTGCAATTGCTAGACAAGGTTCTGGAAGTGCATGCCGCAGTCT GTTTGGTGGATTTGTGAAGTGGATCATGGGAGAGGATAAGGATGGTCGCGACAGCCTTGCTGTTCAGCTCGAAGACGAGAAGCACTGGGATGAACTCGTT ATTATTATTGCCGTGGTAAGTTCACGGCAGAAAGAAACAAGTAGCACTTCAGGGATGCGGGAAAGTGTTGAAACTAGTTTGCTTTTGCAGCATCGAGCAA AGGAAGTTGTACCAAAACGGATTGTCCAGATGGAAGAAGCCATAAAAACCAAGGATTTTGCCTCTTTCTCAGCATTAACCTGTGCTGATAGTAATCAGTT CCACGCAGTCTGCCTAGACACTTGCCCTCCGATATTCTACATGAACGATACATCCCATAGGATAATCAGCTGCGTCGAGAAATGGAATAGATCTCAAGCA ACAGCTCAGGTAGCTTACACCTTTGATGCTGGGCCGAATGCTGTTCTGATTGCTCGAAACCGGGAAGCTGCTGCTCAGCTCTTGCAAAAACTGCTCTTCT ATTTCCCTCCGAGTTCCAATACAGACTTAAACAATTATGTAATTGGAGACAAGTCAATCCTCAAAGATGCTGGAATACAAAGCGTAAAGGACATCGAAGC CCTACCCCCATCTCCAGAAAGCAAGGACGCTCAGAGGTACGAAGATGGCTTTGAGTTTGTTTCATCGTCATCATCATCCATCGTCTGTAACTTTCTCGTC GAGAGTTCACTCCAAGCAAACAGCTGCTGTCTCTCGTTGATACGAAGGCTGCTGCTTTTCTTGTGCTCTGCTATCGTCGAAACGAAGAGCTGCTCTGCGC ACCTCAGATCGGCGGCGGCTGCTCCGCCTCCAGCTCACCTGAGCTCCGACTTCTCCATTTCACCTGAGCTTCGACTCCTCAGTTCACCTAAGCTCCGACT TCTCATCGTTGCTAAATCTTCGGTTTCACTCTCTAAGCAGTGGGAATGGTCGGATGAGTCTATAGTAAGCAGACTTGAAGCTGTCTTGCAGCTTTGTTCT GGACCATCTAATCTTAGACAAGGGAAACAAGTTCATGTCCAGTTGATAATTCATGGACTACTGGATGCTGGCTTGCTGGGGCCGAAGATTTTGGGGATAT ATGTTCTCCATGACAGCTTCAGGGATGCTGTGAAAATGTTTTATCAGATCCCTTTGGGTTATACCATGCCTTGGAATTGGATGATCAGAGGATTTAACAA ACTGGGTTGCTTTGATATGGCTTTACTGTTTTACTTCAAAATGTCAGCTTGTGGGGTTTATCCCGATAAGTATACATTTCCTTCTATAATGAAAGCTTGT TGTGGGTTGAACAATGTGGCATTGGGGAAGCTGATTCATAATGACGTTTTAGAACTGGGGTTTGATCTGGATATGTACATGGGTAGTTCGTTAGTGAAGT TGTACGCTGAGAATGGGAATCTTCAAGATGCACGTTTATTATTCAGTAGAATGTCTCAAAAAGATTGTGTTATGTGGAATGTGATGCTTAGCAGTTTTGC AAGATATGGGGAGTTAGGTGGTGTCCTGAAAACATTCAATGAGATGAGAAATTCAGGAATTATACCCAATGCAGTTACCTTTGCTTGTGTTCTTTCCGTC TGCAATGCTGAAGCGATGATTGACTTTGGCTGTTTGATTCATGGGCTTGCTGTTACTCACGGGTTGCAGTTTGATCCGCAAGTAGCAAATACGCTAGTTT CCATGTACTCAAAAAGCAGACATTTGATTGATGCACGAAAGATGTTTCATAGGATGCCAGAGACTGATTTGGTTAAGTGGAATGGCATGATGGCGGGATT GGTGCAACACGGGTTTATGGAAGATGCTTCAAATTTGTTCAATGAGATGATATCTACAGGCATTAAACCAGACTCTAGGACATTTGCCACTTTCCTTCCA TCAGTTACGGATTCTATGAGTTTCTCACTTGTAAAGGAAATTCATGGTTATATAATTAGACATGATATATGTCTGGACGTATTCTTGAAAAGTGCACTGA TTGACATCTACTGTAAGTGCAGGAATGTGGAGATGGCACATAAGATTTTTAGCCAAGGTAGCAACATTGATTTGGTAATGTGTACAGCTATGATCTCAGG CTATGTGCTAAATGGAAAAGAAAACAGTGGATTAGAAGTTTTCAGGTGGTTGCTTATGGAGAAGATGACTCCAAATTCTCTTACCATGACAAGTGTTTTA CCTGCATGTGCCGGTTTGGCAGTCTTGAAACTGGGGAAGGAATTACATGGTAATATCATGAAGAACGGCTTATTAAAGGGTAATGTTCACTTAGAAAGTG CTGTCATGGACATGTATGCAAAATGTGGAAGACTGGATCTCGCTCACCAAACTTTTAGAAGAATGTCTGTAAAAGATGCTGTTAGTTGGAACTCAATAAT CACTAGTTGTACTCAGAATAGTAGTCCAGAAGAGGCCATAGATCTGTTCCGTCAAATGGGAAGGGAAGGACTTACATATAACCGAGTAACAATCTCGGCT GCTTTATCTGCTTGTTCAAACTTGCCAGCACTCCACTATGGGAAACAGATACACAACGTCTTAGTCAAGAGTGCAGTTGACTCTGATGTCTTTGCCGAAA GTGCATTGATAGACATGTATGCCAAATGCGGTTACTTGGAAGTTGCTCGACGCGTGTTTGACAACATGGCAACAAAGAACGAGGTTTCATGGAATAGCAT CATAGCTGCCTATTCCAACAATGGTTGCCTGGATGAGACTCTAACTCTGTTCCATGAGATGTTGGATAATGGAATTCAACCGGATCATGTCACGTTTCTA GCTATAATATCTGCTTGTGCGCATGCTGGCCGAGTAGATGATGGAATTCGGTACTTCCATTACATGACTGAAGTGTGTGGGATCCCGAAAAAGATGGAAC ATTATGCTTGTGTCGTTGATATGTTTGGCCGTGCTGGTCGGCTGAACGAAGCATTTGATTTCATAAAGAGTATGCCATTCCAGCCTGATGCAGGTGTTTG GGGGACATTGCTTGGAGCATGTCGGGTCCATGGCAATGTTGAGCTTGGTAAAGAGGCGTCAAGATATCTCCTTGAGTTAGATCCGAAAAATTCAGGATAC TATGTACTTGTTGCAAACATGCATGCAGATGCTAATCAATGGAGAAGCGTCCGTAACATAAGAACTATGATGAAAGATAGAGGCGTAAATAAAGTACCGG GTTATAGCTGGGTTGATGTCAACCATACCACTCATATGTTTGTTGCTGCCGATGGAAGCCACCCTGAGTCTACGGAAATTTATTCATTGCTCCAGAATCT CCTTCCAGAGCTAAGGAAAGAGGGTTATGCTCAAACTTTTCTTCCGATGCATTCCCATGGGTTCGGGTCTGTGAATGTAGGATAA
AA sequence Show only first row Show all	>Lus10028855 pacid=23177211 polypeptide=Lus10028855 locus=Lus10028855.g ID=Lus10028855.BGIv1.0 annot-version=v1.0 MADKWVRMVTAQTPTNIAVIKYWGKRDEDLILPVNDSISVTLDPAHLCTTTTVAVSPTFDQDRMWLNGKEVSLSGARYQNCLREIRARARDIEDEEKGIK IEKKNWEKLRVHIVSYNNFPTAAGLASSAAGFACLVFALAKLMNAKEDNSDLSAIARQGSGSACRSLFGGFVKWIMGEDKDGRDSLAVQLEDEKHWDELV IIIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVVPKRIVQMEEAIKTKDFASFSALTCADSNQFHAVCLDTCPPIFYMNDTSHRIISCVEKWNRSQA TAQVAYTFDAGPNAVLIARNREAAAQLLQKLLFYFPPSSNTDLNNYVIGDKSILKDAGIQSVKDIEALPPSPESKDAQRYEDGFEFVSSSSSSIVCNFLV ESSLQANSCCLSLIRRLLLFLCSAIVETKSCSAHLRSAAAAPPPAHLSSDFSISPELRLLSSPKLRLLIVAKSSVSLSKQWEWSDESIVSRLEAVLQLCS GPSNLRQGKQVHVQLIIHGLLDAGLLGPKILGIYVLHDSFRDAVKMFYQIPLGYTMPWNWMIRGFNKLGCFDMALLFYFKMSACGVYPDKYTFPSIMKAC CGLNNVALGKLIHNDVLELGFDLDMYMGSSLVKLYAENGNLQDARLLFSRMSQKDCVMWNVMLSSFARYGELGGVLKTFNEMRNSGIIPNAVTFACVLSV CNAEAMIDFGCLIHGLAVTHGLQFDPQVANTLVSMYSKSRHLIDARKMFHRMPETDLVKWNGMMAGLVQHGFMEDASNLFNEMISTGIKPDSRTFATFLP SVTDSMSFSLVKEIHGYIIRHDICLDVFLKSALIDIYCKCRNVEMAHKIFSQGSNIDLVMCTAMISGYVLNGKENSGLEVFRWLLMEKMTPNSLTMTSVL PACAGLAVLKLGKELHGNIMKNGLLKGNVHLESAVMDMYAKCGRLDLAHQTFRRMSVKDAVSWNSIITSCTQNSSPEEAIDLFRQMGREGLTYNRVTISA ALSACSNLPALHYGKQIHNVLVKSAVDSDVFAESALIDMYAKCGYLEVARRVFDNMATKNEVSWNSIIAAYSNNGCLDETLTLFHEMLDNGIQPDHVTFL AIISACAHAGRVDDGIRYFHYMTEVCGIPKKMEHYACVVDMFGRAGRLNEAFDFIKSMPFQPDAGVWGTLLGACRVHGNVELGKEASRYLLELDPKNSGY YVLVANMHADANQWRSVRNIRTMMKDRGVNKVPGYSWVDVNHTTHMFVAADGSHPESTEIYSLLQNLLPELRKEGYAQTFLPMHSHGFGSVNVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10028855 [exp]	0	1
AT4G04940			transducin family protein / WD...		Lus10036625 [exp]	2.6	0.8581
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	6.0	0.8495
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10000701 [exp]	6.9	0.8408
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	7.1	0.8324
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	8.7	0.8487
AT1G62950			leucine-rich repeat transmembr...		Lus10007019 [exp]	9.2	0.8308
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	14.2	0.8245
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	15.0	0.8243
AT3G07210			unknown protein		Lus10038194 [exp]	15.3	0.8089
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	27.7	0.7801

Compare expression of checked genes

Lus10028855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.