Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25100 449 / 8e-161 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008965 [exp] 565 / 0 AT2G25100 471 / 2e-169 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G019800 [exp] 468 / 4e-168 AT2G25100 443 / 3e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Potri.010G239500 [exp] 51 / 5e-08 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01351 [flax] [poplar] RNase_HII Ribonuclease HII
Representative CDS sequence Show only first row Show all	>Lus10028856 pacid=23177321 polypeptide=Lus10028856 locus=Lus10028856.g ID=Lus10028856.BGIv1.0 annot-version=v1.0 ATGGGGTCGGAGGAGGTAACAGCAGCTCTGCCTGAATGGACATCCACTCCTTGCATTATGGGCATCGACGAAGCCGGCCGTGGCCCTGTTCTCGGCCCCA TGGTGTATGGATGCTTGTATTGTGCTCGCTCCTACCAGGAGACTCTATTAACCTTGAGTTTTGCAGACTCAAAGACCTTAAAGGAAGAGAAGAGGGAGGA ATTGTTTGAAAGTCTGAAGCTTGACGAGTCAATTGGATGGGCTGTTGATGTCATTGATCCGAGAGAGCTGTCTGCGAAAATGCTAAAGAAGAATAAGATC AATCTGAATGAGATATCTCACGACTCAGCAAGTGGTCTGGTCAAGAGAGTTCTGAACATGGGAGTTCTTCTAACTGAGGTCTATGTTGATACAGTTGGAG ATCCAGAGAAATATAGAGTCAAACTCTCAGAACGATTTCCATCCGTCAAATTTGTAGTCGCAAAGAAGGCTGACAGTCTTTACCCGGTTGTTAGTGGAGC CAGCATAGTCGCAAAGGTCACTAGAGATAGATCCCTGCGAGAATGGGCGTTTGATGAAACAGACAAAGACATCGGCAGGAACTTCGGTTCTGGATACCCT GGAGACCCTGAAACAAAGACATGGCTGGAGCAACATAAACATAAAGTGTTTGGGTTCCCCAAATTAGTTCGTTTCAGTTGGGGAACATGTAATTCCTACT TCAAAGATGGTGTAGAAGTCTTGTGGGAGGCTGACATCGACGAAGACAGTACTAGCAACAGTAATGGAAAACGACAGTTGAAGTTAAGCAACTTTGGAGT CACAACCTCCAAGAAGAAGAAGGAAGAAGTTGAATCGAGCTGTAAAGGGCGTTGCAAGTTCTTCGAGACAAGGAAACTTGAACAACTTGCTGATTTCTAA
AA sequence Show only first row Show all	>Lus10028856 pacid=23177321 polypeptide=Lus10028856 locus=Lus10028856.g ID=Lus10028856.BGIv1.0 annot-version=v1.0 MGSEEVTAALPEWTSTPCIMGIDEAGRGPVLGPMVYGCLYCARSYQETLLTLSFADSKTLKEEKREELFESLKLDESIGWAVDVIDPRELSAKMLKKNKI NLNEISHDSASGLVKRVLNMGVLLTEVYVDTVGDPEKYRVKLSERFPSVKFVVAKKADSLYPVVSGASIVAKVTRDRSLREWAFDETDKDIGRNFGSGYP GDPETKTWLEQHKHKVFGFPKLVRFSWGTCNSYFKDGVEVLWEADIDEDSTSNSNGKRQLKLSNFGVTTSKKKKEEVESSCKGRCKFFETRKLEQLADF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25100			Polynucleotidyl transferase, r...		Lus10028856 [exp]	0	1
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	5.7	0.9097
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	8.7	0.8720
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	10.5	0.9081
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	13.4	0.8970
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	13.9	0.8768
AT4G39380			unknown protein		Lus10020841 [exp]	14.6	0.8357
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	18.0	0.8894
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10004186 [exp]	18.0	0.8629
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10041009 [exp]	19.6	0.8840
AT5G50930			Histone superfamily protein (....		Lus10022425 [exp]	20.0	0.8530

Compare expression of checked genes

Lus10028856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.