Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 411 / 2e-139 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45570 400 / 6e-135 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 391 / 1e-131 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33720 387 / 5e-130 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 386 / 2e-129 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45580 385 / 6e-129 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT1G33730 320 / 1e-105 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT4G12300 303 / 2e-97 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12310 301 / 3e-96 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G07990 299 / 1e-95 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028881 [exp] 619 / 0 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 619 / 0 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 615 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 613 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 602 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 587 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 583 / 0 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 576 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 575 / 0 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 515 / 2e-180 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 488 / 2e-169 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 391 / 1e-131 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 380 / 3e-127 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 378 / 1e-126 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 376 / 6e-126 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 376 / 6e-126 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.015G138900 [exp] 334 / 2e-109 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 326 / 5e-106 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.007G084200 [exp] 316 / 1e-102 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028857 pacid=23177111 polypeptide=Lus10028857 locus=Lus10028857.g ID=Lus10028857.BGIv1.0 annot-version=v1.0 ATGGACTTGTTACTGATCATGCTCACCTGTTCACTCTGCCTCCTGATCACCACCTTGGCCGTCCTCTTTCGTTTCCCGGCGTCCAACAAAAATCCGGCTG TGAAACTACCGCCGGGCCCATCACGTCTTCCAATCATAGGCAACCTCCTTAACTTGCTTGCCGGCGGCAAGTTACCCCACCAATCCCTAGCCAACCTTGC CAAAATTCATGGTCCTTTAATGAGCCTGAAGCTCGGCCACGTCACCACGATCGTCGCTTCCTCTCCGGCGGTAGCCAAAGAGATGCTCCAAAACAACGAC CAACTTCTCTCCGACCGCTACCTCAATCGAGCCATGTGCACTTTCAGTCACCACAAATTCGGCATGTCGTTGCTCCCCGTGGGATCATCCGAGTGGAGGA GCCTCCGGAAAGTCTGCAGCACGTATCTTTTCGCTAACCAAAAGCTGGATTCCGACCAGGACACTCGGAGGAAGAAGATGGATGAGCTCCTTAAAAGTGT TCGACGAAATGCCTCAGAAGGGAAAGCCGTGCATATTGGGGAAGCGGCGTTTAGAACAAGTGTTGGCACCCTGTCGACGACGGTTCTTTCGTTGGATTTG ACGGACGAGGATGTTGTGGACTTCAAGGAGGCTAGGGGTATAATGGATGAAGCAGGGAAGCCGAATTTCGGAGACTATTTCCCGGTTCTGGGTGCGATGG ATTTGCAGGGGATAGAGAGGCGGATCGTGAGTCATTCCAGGAAGTCGTTGGATTTGTTCGGAAAGATAATCGACGAACGACTGAAGAAGCGGAAATCTGA GGCATATGTCTCGGCTAATGACATGCTCGATACCCTTCTGGACATTGGTGGTGATCAAGAGGCTTCCATTGATCTAAATCTCATCAAACACTTGTTCTTG GATCTATTCGTCGGTGGAATCGATACAATGACGAGCACATTAGAATGGGCGATGGCAGAAATGATCCGCAACCCCCTTGTATACGCTAAAGCAAAAGATG AAATAGATCGAACCATAGGGAAGGAAAATCGTCTACTAGAATCTGACATCCTTCAGCTACCTTATTTGCAAGCCATACTTAAAGAGACTTTCAGGTTACA CCCGGCTTCTCCTCTACTGATTCCACGAAGGGCAAGAGCCGACTTGGAAATCTGCGGGTTCACCGTGCCTAAAGGAGCACAAATTCTAGTCAATTTATGG GCCATTGGTAGAGATCCGGACATATGGAACGATCCAACTTCATTCATGCCAGAGAGGTTCATGGGATCGGAGATTGATTTTCGCGGAAGTAGTTTCGAAC TGATCCCTTTCGGGGGTGGACGAAGAATTTGCCCTGGGTTGCCGTGGGCAATGAGGATGTTGCCATTGATGTTGGGATCCTTAGTTCACGAATTCGATTG GATGTTGGAGGATGGAGTTGAGCCAGAAAGTTTAGATATGGAAGAGAAATTTGGAATCACTTTGGAGAAAGCCAAACCTTTGTTTGTTGTTCCCATACTT AGATAA
AA sequence Show only first row Show all	>Lus10028857 pacid=23177111 polypeptide=Lus10028857 locus=Lus10028857.g ID=Lus10028857.BGIv1.0 annot-version=v1.0 MDLLLIMLTCSLCLLITTLAVLFRFPASNKNPAVKLPPGPSRLPIIGNLLNLLAGGKLPHQSLANLAKIHGPLMSLKLGHVTTIVASSPAVAKEMLQNND QLLSDRYLNRAMCTFSHHKFGMSLLPVGSSEWRSLRKVCSTYLFANQKLDSDQDTRRKKMDELLKSVRRNASEGKAVHIGEAAFRTSVGTLSTTVLSLDL TDEDVVDFKEARGIMDEAGKPNFGDYFPVLGAMDLQGIERRIVSHSRKSLDLFGKIIDERLKKRKSEAYVSANDMLDTLLDIGGDQEASIDLNLIKHLFL DLFVGGIDTMTSTLEWAMAEMIRNPLVYAKAKDEIDRTIGKENRLLESDILQLPYLQAILKETFRLHPASPLLIPRRARADLEICGFTVPKGAQILVNLW AIGRDPDIWNDPTSFMPERFMGSEIDFRGSSFELIPFGGGRRICPGLPWAMRMLPLMLGSLVHEFDWMLEDGVEPESLDMEEKFGITLEKAKPLFVVPIL R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028857 [exp]	0	1
AT1G04910			O-fucosyltransferase family pr...		Lus10030093 [exp]	3.0	0.8524
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10027062 [exp]	5.3	0.8237
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007714 [exp]	6.0	0.8225
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10018748 [exp]	11.5	0.7877
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	14.0	0.8146
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10037560 [exp]	18.9	0.8293
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10016569 [exp]	26.6	0.8135
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10041614 [exp]	29.3	0.7341
					Lus10008920 [exp]	33.6	0.7778
					Lus10007776 [exp]	38.7	0.8214

Compare expression of checked genes

Lus10028857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.