Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24460 306 / 3e-102 CLT2 CRT (chloroquine-resistance transporter)-like transporter 2 (.1), CRT (chloroquine-resistance transporter)-like transporter 2 (.2) AT5G12170 275 / 7e-90 CLT3 CRT (chloroquine-resistance transporter)-like transporter 3 (.2) AT5G19380 273 / 6e-89 CLT1 CRT (chloroquine-resistance transporter)-like transporter 1 (.1), CRT (chloroquine-resistance transporter)-like transporter 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008964 [exp] 465 / 1e-163 AT4G24460 291 / 8e-94 CRT (chloroquine-resistance transporter)-like transporter 2 (.1), CRT (chloroquine-resistance transporter)-like transporter 2 (.2) Lus10000891 [exp] 212 / 3e-64 AT5G12170 364 / 1e-120 CRT (chloroquine-resistance transporter)-like transporter 3 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069400 [exp] 285 / 7e-94 AT5G19380 422 / 4e-145 CRT (chloroquine-resistance transporter)-like transporter 1 (.1), CRT (chloroquine-resistance transporter)-like transporter 1 (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028858 pacid=23177195 polypeptide=Lus10028858 locus=Lus10028858.g ID=Lus10028858.BGIv1.0 annot-version=v1.0 ATGAAGGATTACCCCTTCTTCCTAGCTCAGTTCACTACCTTCGGGTACGTGGTGATTTACTCGTCGATATTGCATATGAGGTACCGTGCAGGGATTGTGA GTGATGAGATGTTGGCGCTTCCTAAATCTCGGTATGCTGCCATTGGTGCTTTTGAAGCCGTTGGAACCCTAATTGGAATGTACGCTGCTGCCAATCTACC TGGACCTTCTATACCTATACTGCATCAGACATTCTTGATTTGGCAACTCGCTTTTTCCAGCATTTTCCTCGGCCGAAGGTACTCGTATGCTCAAATGGCT GGCTGCTTGCTTGTAGCTATTGGTGTAGTCATGGCTGTGACAAGTGGATCCAGTGATGAGCAGATGCTATCTGGTGACGAGTACATGTGGGCAGCTGTCA TGATATTATCCAGTGCTCTTCATTCCGGTGCTATGATACTAAAGGAATTCGTGTTTCTTGATGCTGCCAAAAAATTGAAGGGGAAATCGCTTGACATATT TGTTGTCAATACATTAGGTTCTGGATTTCAGGCTCTTTTTGTGCTGATGTTTCTTCCCCTCATGTCGAACTTCAAGGGCATTCCACTTGCTCAGCTTCCA CTGTACTTGAAAAATGGGACTGGTAGTTTCCTGAATCTCTGGTCCGACTCGCCAGGCAAGTTCTCGCAATCGACGGGTGCTCCACTGCTGCCAATGCTGT ACATAGCTGCTAACTTGACGTTCAATATATCGATGCTAAAGCTAATGAAGGTTTCATCTGCGGTTGTATCCTCTCTTGCCACCACATTAGCAGTGCCGTT GTCGATTTACGTTCTATCGCTTCCATTACCGTATCTTGATGAGAGTTCGACCCTGAGCCCCTATTTTATGTTTGGGAGCGCGACTCTCGTGTTGGGTCTC GCGCTCTACAATTTCGCTCCAAAGCAAAAGCAAACTAGTGAATAG
AA sequence Show only first row Show all	>Lus10028858 pacid=23177195 polypeptide=Lus10028858 locus=Lus10028858.g ID=Lus10028858.BGIv1.0 annot-version=v1.0 MKDYPFFLAQFTTFGYVVIYSSILHMRYRAGIVSDEMLALPKSRYAAIGAFEAVGTLIGMYAAANLPGPSIPILHQTFLIWQLAFSSIFLGRRYSYAQMA GCLLVAIGVVMAVTSGSSDEQMLSGDEYMWAAVMILSSALHSGAMILKEFVFLDAAKKLKGKSLDIFVVNTLGSGFQALFVLMFLPLMSNFKGIPLAQLP LYLKNGTGSFLNLWSDSPGKFSQSTGAPLLPMLYIAANLTFNISMLKLMKVSSAVVSSLATTLAVPLSIYVLSLPLPYLDESSTLSPYFMFGSATLVLGL ALYNFAPKQKQTSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	1.0	0.9656
AT1G54730			Major facilitator superfamily ...		Lus10029960 [exp]	2.0	0.9547
					Lus10022087 [exp]	2.8	0.9426
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10008968 [exp]	3.2	0.9519
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	3.9	0.9543
AT1G54730			Major facilitator superfamily ...		Lus10029961 [exp]	4.2	0.9460
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	4.5	0.9535
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10018083 [exp]	6.0	0.9344
AT2G14095			unknown protein		Lus10035649 [exp]	9.0	0.9388
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10006505 [exp]	12.2	0.9192

Compare expression of checked genes

Lus10028858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.