Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 429 / 8e-151 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 422 / 7e-148 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 408 / 6e-143 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 381 / 5e-132 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 380 / 2e-131 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 367 / 1e-126 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 359 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 280 / 1e-92 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 266 / 2e-87 alpha/beta-Hydrolases superfamily protein (.1) AT1G08310 249 / 4e-81 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008960 [exp] 542 / 0 AT2G36290 353 / 8e-122 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 451 / 5e-160 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 451 / 2e-159 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 447 / 3e-158 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 446 / 7e-158 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 444 / 5e-157 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 447 / 9e-157 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 431 / 3e-151 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 424 / 2e-148 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 479 / 6e-171 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 471 / 7e-168 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 444 / 3e-157 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 444 / 3e-157 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 444 / 2e-156 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 374 / 2e-129 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 367 / 4e-127 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 305 / 2e-102 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 140 / 3e-37 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 137 / 2e-36 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10028860 pacid=23177138 polypeptide=Lus10028860 locus=Lus10028860.g ID=Lus10028860.BGIv1.0 annot-version=v1.0 ATGCTAAGAGGGTCAATAGCAGTGGTTTTGTTAATTGTGTGGATGTATCAAATCACTTACCCGCCACCCCCCAAAATCTGCGGTAGCCGAAATGGTCCGC CAGTCACGGCTCCAAGAATCAAGCTTAGAGATGGCAGACATTTAGCATATAAGGAAAATGGTGTACCAAGAGATGCAGCCAGATTCAAGGTCATATTCAT CCATGGCTTCTTCTCTTGCCGCCATGACCCTGTCATTACCTTCCCTCCGGAAGTTTACCAACAGCTACAAGTGCACATTCTGTCGTTTGACAGACCGGGG TACGGAGAGAGCGATCCGGACCCTAACCGTAACCCCAAGAGCTTGGCTTTGGATGTGGAGGAGCTTGCAGATCAGTTGGGACTAGGCCCCAAATTCTATG TGGTTGGGTTCTCCATGGGTGGTCAAGCTGTTTGGGGCTGCCTCAACTACATCCCTCACAGGGTAGCAGGAGCCACACTAATAGCTCCGGCGGTGAACTA CTGGTGGCCAGGGTTTCCAGCCAACTTATCAACACAAGCATATAAGTTGCAGCTACCAAGAGATCAATGGACACTCGGGGTTTCACATTATGTTCCATGG CTCACCTATTGGTGGAACTCCCAGAACTGGTTCCCTTCATCTGGTGTTGCAGCTGGCCACCCTGACACTTTCTCCACGCACGACGTGCAGATAAGGACCG AAACAAAACAGCAACCCGACGAGGTGAATGCGTACATAATACAGCAAGGGAAGTATGAAGCATTGCATAGGGACATGATGGTAGGATTCGGGAGCTGGGA ATTCGACCCCATGGACATTCAGAATCCGTTCCCGAACAACGAAGGTTCAGTTCAGCTGTGGCAAGGCGATGAGGACAGAATGGTACCGGTCATATTGCAG CGTTACATCGCCGAGAAGCTGCCATGGATAACTTACCATGAATTGGCCGGCGCCGGGCATCTGTTCCCATTTATCCCTGAACAAACTCAGGCCATTCTGA CGGCTCTGTTATCACCATTATCATCATCGTCTGAGGTTTGA
AA sequence Show only first row Show all	>Lus10028860 pacid=23177138 polypeptide=Lus10028860 locus=Lus10028860.g ID=Lus10028860.BGIv1.0 annot-version=v1.0 MLRGSIAVVLLIVWMYQITYPPPPKICGSRNGPPVTAPRIKLRDGRHLAYKENGVPRDAARFKVIFIHGFFSCRHDPVITFPPEVYQQLQVHILSFDRPG YGESDPDPNRNPKSLALDVEELADQLGLGPKFYVVGFSMGGQAVWGCLNYIPHRVAGATLIAPAVNYWWPGFPANLSTQAYKLQLPRDQWTLGVSHYVPW LTYWWNSQNWFPSSGVAAGHPDTFSTHDVQIRTETKQQPDEVNAYIIQQGKYEALHRDMMVGFGSWEFDPMDIQNPFPNNEGSVQLWQGDEDRMVPVILQ RYIAEKLPWITYHELAGAGHLFPFIPEQTQAILTALLSPLSSSSEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028860 [exp]	0	1
					Lus10034812 [exp]	3.5	0.9622
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	3.6	0.9650
					Lus10033359 [exp]	4.9	0.9590
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10040600 [exp]	5.3	0.9424
AT1G03700			Uncharacterised protein family...		Lus10011179 [exp]	6.0	0.9474
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10034813 [exp]	10.1	0.9435
AT4G24130			Protein of unknown function, D...		Lus10017330 [exp]	10.5	0.9469
					Lus10003161 [exp]	11.0	0.9362
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	11.6	0.9380
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	11.7	0.9415

Compare expression of checked genes

Lus10028860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.