Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10650 287 / 2e-79 AtNUP1 unknown protein AT5G20200 96 / 1e-19 nucleoporin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008959 [exp] 1723 / 0 AT3G10650 405 / 4e-120 unknown protein Lus10034137 [exp] 654 / 0 AT3G10650 323 / 2e-92 unknown protein Lus10043447 [exp] 635 / 0 AT3G10650 320 / 4e-90 unknown protein Lus10043265 [exp] 57 / 7e-08 AT5G20200 290 / 8e-87 nucleoporin-related (.1) Lus10019408 [exp] 55 / 4e-07 AT5G20200 273 / 2e-80 nucleoporin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014800 [exp] 443 / 7e-134 AT3G10650 379 / 1e-110 unknown protein Potri.010G244700 [exp] 427 / 2e-128 AT3G10650 353 / 8e-102 unknown protein Potri.008G015350 [exp] 121 / 1e-29 AT3G10650 77 / 2e-15 unknown protein Potri.018G006200 [exp] 77 / 7e-14 AT4G31430 148 / 4e-38 unknown protein Potri.018G129900 [exp] 66 / 2e-10 AT5G20200 317 / 1e-96 nucleoporin-related (.1) Potri.006G275200 [exp] 49 / 3e-05 AT4G31430 156 / 3e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028861 pacid=23177258 polypeptide=Lus10028861 locus=Lus10028861.g ID=Lus10028861.BGIv1.0 annot-version=v1.0 ATGGCGGCGCCGACGATGAGTCGAGATGGGAAACATAGCCAGCCCTACGAGGATGGAGGTGGCTACGGCAAGTTCCGGAAGCGTCCCCTCCGCCGGAGCC AGGCGACTCCGTACGATCGGCCGTCGACCTCAATTCGAAACCCTGGCCTCCAAACCGCAAACGGCAACGGTAGCGGTTGGTTCTCGAAACTGGTCGATCC GGCGCAGAAGCTCATCTCCTCTGGTGCTCAGAGGTTTTTTGCATCTGTCTTCCGCAAGCGCCTTGCCCCTCCTCCACCGACGCGGCCTCTGGAAGCAGAA GCAGAGCAGGGAACAAAGGAAAAACAAGTCAAAACGACGATCAAGGACAAGCAAGTCATAACAATTCCCAAGGATAAACAAGATGAAACAGTTCCCATGG TTCATGTAGACTCTCGGGGAGAAACTAGCCACGTGTATGATGGCCCAAGTAGCTCAAATGGAGGCGGGGCTACTGATTTGGAGTCGATGTTGAAGCATAA AAGTTTTACCAGGCATGAGATTGATAGATTGACTGCTCTATTGCAGTCAAGAATGGTTGATTCACCTCCAGAAACTGGGAAGAATGCTGAAGTTGCTCCA TCAAATTTATTTCGGCTGGGGGACAAGGATGAATTGGCCATCACTCCGGTTAAAAATCGTGGGACTATGAACAACTTATTCTCAACCCCTGTTGTACTTG ATCAAGATGTTACTTCACCAGCGGAGCTTGCAAAAGCTTACATGGGCAGTAGACCTTCCAAGGTATCTCCATCAATGTTAGGTTTCCCCAGTCAACCATG GAAGGAAGATTCAGCTCCTCAGTTAAGTCCAAACTTTATTTCAAAATGGCCAACTCCATCCGCCATTTACAGGTCTTCCAGTCAAGCTGGATTGACAGAT AATGGATTCATGACACCAAACTCACGTGGTAGATCTGCTGTTTACAGCATGGCTAGAACTCCATACTCCAGAACCCAGTCAACTAAAATGATTCAGGCTA TAGGTACCTCAAATAATGCTTGGGGTGGGCGAGATTCTCCTTCTCTTAGTGCATTGGAGAATGGCAGAGTTTATGGATCGAAACAAGGGACTTTGAAGAG AAGGAGTTCTGTACTGGACAACGATATAGGATCTACTGGTCCTATTCGCAGGATTCGCCAAAAATCAAATCTAATGCCTACTGGAGCTCTCTCCTCCCGT GGAACTCGTTTCACTTCGAATGCAGAGAGACAGCTATCCTTGACCTCAAAGCCTGCTCTAGACAATAAACCTTCCAAGGAAAATAACGACTATAACATTC ATAGTTCAGGATTTACTCCCATCTCTTCTCAATCCAGTGAGATGGCTTCAAAGATACTCAAACAGCTAGATGTGTTGGTCTCATCTAGGGAAAAGTCCCC TAGTAAATTGTCCCCATCGAAGCTACGTGGACAAGCTCTTAGAAGCCTAGAGAAAATAGATTCTTCAAAGTTTTTGGAGAGTTTTCAGAATCCTGGGATG GATGCTCCAGATGCTGGTATGTTAGATGATTCTCAACCCCGTATGCCTCAAAATGAGGACATGAGTGAACAAACTGGTCCGGGTAAAGTTAACTATCTTA GTAGCAAGTTGGGTACTGGAAAAACTGTAGAGGCACCTACTTCAGCTGGTGATGGAGCAGCTAAAGGAGTTGATTCTACCATCAAGCCCCCTCAGGTGGG AAAACCTGGATTTAGTATAAGTGCAGATGAGGATTTCCGGGAGATGGATGACGATGACGGTGTCAGGCAAAATGCTACCGGTGACAAGGACAATATGAAG TTCATCTCTAGTTCTTCTAATGGTAAAGCTGCTGAAACTGTTACGATGGGAAACCCTTCAGTTCTTTTTGAAGCGACTCCCCAGACAAATTCTACACTGA TCAAGAATGATGATGCGACAATCCTTGGAAAAAGCAATACTTTTGCAGTTGATGCAGCTTCATCCATGGGAATTGTGAAGCATGCGGCCTCCTTAAGTCA ATCAGCTGGAGCTTCTGATAAGACTGACGGTAGAGTATCCGGGGAGAAGATTGCTTTTCAAATTGGGCTTGATGTTGCCAATGAGAGAACCCCTGTGTTT TCGTCTTCATCTCCGACAGCCACAAATGATAGATTTGGTGCTTCATCAAACTCCCAATCAGAAAGCTCAGAGAGGACTGTTACTGCTGCTTCCATAATAG TTGATCCTGTGGCAAAACAACCTGAAGCTGATAAAGATGTTGAGAGAAACAAATCTAGCATCTCATTCCTGAATAATAATGAAACTGTACCTGCATCTTT GTTGGCCTCACCACCTGCTGGAGGCATATTCTCATTTGGGTCCGGTCTACAAAATGGAACTGCTCAAACTGTATCCAACAGTTCCGTCTCGGTTGTTCCT AGTGGCACCATTGGCGCAGACATCTCTGCGAATGCGGCAAAAACTGATAGTAAAGGCGATTTTAAATCAGCTTTAGCACCTCCCTCGAGTTCATCCATTT TCAAATTTGGGTCAACTCCTTTTTCAGGTTCAGTTTCTTTGGCTTCAACAAATGCTGGTAGTGTCATTAGCCAAAACAAAGCAGACACTAGCTTTGGAAG TTTCATTAGTATTGCCACCGGTGATTCCAAACCTGCAGTCACAATTGCTGAGAACAGTACCGTCAGCCCCTCATGTGATATTTCAGCTACGGAAAAGGGA AGTGCCTTAATTGGTGGTACTGGTGTTTCAAGTACAAGCGCTGGAAACAGTCTTTTTGGTGGTAAACCTACTTCTGGTACAAGCACCAGCAGTAACCCTG TTGGTGCTTCTAGCTCTGCTGGTACGAGCACTGGAAGTGGTCTCTTTAGTACCACTGGTGGTTCCAGCAGTGGAAACAACCTCTTCAGTGCAACAGCTCC AAGTACGGCTACTGGGAGTAGTCCTTTTAGTTTCAGTGCTAAATCAGTACCGTCAGGTGTGAGCAATCAGTCTCAGAATATGAATAATACTCTAGGCAGC ACCCAGGTAGCTGCAACTGGCTCTGCCTCGTCAAACCCGAGTACCACTACTCCATTCAGTTCTACTTTGCCGTCTCCTTTTCGGTTGTCAAACTCTTCTG CTGCTCCCGGTAATTCACTTTTCAGCTCATCGTCTGCTTATAGTATGTTTAGTTCTGGTCCTTCTTTTGGAGCAACACCTTCCTGCCCAGCTTCAGAACC GAACTCAGTTAGCTCAACTGCTAGCACATCATCTCCAATACTCGGTACAAGCTGGTCAACGCCTACACTATCTGTGTTTAGTACTGTGCCCAACTTCACA GCTTCGTCGAGTGGGTTTGTCTTTGGAGCGTCGTCAAGTGCAGCTACCGCAGGAACTTCTGTCTTTGGATCTTCTACATCCAGTTCCCCATTCTCCTTCA GTGCAGCTGCAGCAAATCCTCCTCCTAGTACATCTTTTGCGTTCAATTCGACTCCATCTTTTGGCTCGACACCGTCAGGTAACAATGATCAAATGAGCAT GGAAGACAGCATGGCAGAAGACACAGTTCAGGCAACCACACATTCTGTTCCCTTCTTCAGTCAGCCAACATCTGCACCCCCTTCCTCTGGCTTTGTATTC GGTTCGGAAGCTCCACCTAGTGGACCTCTGCAATTCAGCTCCACAACTCCGGCAAATCCACAGTTTGGTGCAGCATCACCATTCCAATTTGGCGGCCATC AAAGTATGCCGGCAGCTCCTCCACAAAATGCTTCACCATTTCAAGCCAGCGGGAGCCTGGAGTTCAATGCGGGAGGCAGCTTTTCATTAGGGACAGGTGG TGATAAGAGTAACAGAAGAATCATAAAAGTGAAGAAAAGCAATCGGAAGAGGTGA
AA sequence Show only first row Show all	>Lus10028861 pacid=23177258 polypeptide=Lus10028861 locus=Lus10028861.g ID=Lus10028861.BGIv1.0 annot-version=v1.0 MAAPTMSRDGKHSQPYEDGGGYGKFRKRPLRRSQATPYDRPSTSIRNPGLQTANGNGSGWFSKLVDPAQKLISSGAQRFFASVFRKRLAPPPPTRPLEAE AEQGTKEKQVKTTIKDKQVITIPKDKQDETVPMVHVDSRGETSHVYDGPSSSNGGGATDLESMLKHKSFTRHEIDRLTALLQSRMVDSPPETGKNAEVAP SNLFRLGDKDELAITPVKNRGTMNNLFSTPVVLDQDVTSPAELAKAYMGSRPSKVSPSMLGFPSQPWKEDSAPQLSPNFISKWPTPSAIYRSSSQAGLTD NGFMTPNSRGRSAVYSMARTPYSRTQSTKMIQAIGTSNNAWGGRDSPSLSALENGRVYGSKQGTLKRRSSVLDNDIGSTGPIRRIRQKSNLMPTGALSSR GTRFTSNAERQLSLTSKPALDNKPSKENNDYNIHSSGFTPISSQSSEMASKILKQLDVLVSSREKSPSKLSPSKLRGQALRSLEKIDSSKFLESFQNPGM DAPDAGMLDDSQPRMPQNEDMSEQTGPGKVNYLSSKLGTGKTVEAPTSAGDGAAKGVDSTIKPPQVGKPGFSISADEDFREMDDDDGVRQNATGDKDNMK FISSSSNGKAAETVTMGNPSVLFEATPQTNSTLIKNDDATILGKSNTFAVDAASSMGIVKHAASLSQSAGASDKTDGRVSGEKIAFQIGLDVANERTPVF SSSSPTATNDRFGASSNSQSESSERTVTAASIIVDPVAKQPEADKDVERNKSSISFLNNNETVPASLLASPPAGGIFSFGSGLQNGTAQTVSNSSVSVVP SGTIGADISANAAKTDSKGDFKSALAPPSSSSIFKFGSTPFSGSVSLASTNAGSVISQNKADTSFGSFISIATGDSKPAVTIAENSTVSPSCDISATEKG SALIGGTGVSSTSAGNSLFGGKPTSGTSTSSNPVGASSSAGTSTGSGLFSTTGGSSSGNNLFSATAPSTATGSSPFSFSAKSVPSGVSNQSQNMNNTLGS TQVAATGSASSNPSTTTPFSSTLPSPFRLSNSSAAPGNSLFSSSSAYSMFSSGPSFGATPSCPASEPNSVSSTASTSSPILGTSWSTPTLSVFSTVPNFT ASSSGFVFGASSSAATAGTSVFGSSTSSSPFSFSAAAANPPPSTSFAFNSTPSFGSTPSGNNDQMSMEDSMAEDTVQATTHSVPFFSQPTSAPPSSGFVF GSEAPPSGPLQFSSTTPANPQFGAASPFQFGGHQSMPAAPPQNASPFQASGSLEFNAGGSFSLGTGGDKSNRRIIKVKKSNRKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	0	1
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	1.7	0.8836
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	3.5	0.8339
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	4.0	0.8977
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	4.9	0.8751
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	5.0	0.8750
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10026334 [exp]	5.3	0.8885
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10014601 [exp]	6.3	0.7933
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10033309 [exp]	7.1	0.8413
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	9.2	0.8666
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	9.9	0.8625

Compare expression of checked genes

Lus10028861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.