Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65550 160 / 4e-44 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 150 / 3e-40 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 145 / 3e-38 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT2G15490 144 / 4e-38 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT1G05560 143 / 1e-37 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT1G05530 141 / 6e-37 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT2G15480 138 / 8e-36 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G43820 133 / 3e-34 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT4G34138 133 / 4e-34 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT5G12890 132 / 2e-33 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008956 [exp] 738 / 0 AT5G65550 189 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10028865 [exp] 615 / 0 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10008955 [exp] 594 / 0 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10028864 [exp] 570 / 0 AT5G65550 154 / 1e-42 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 336 / 9e-111 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10006280 [exp] 295 / 5e-95 AT5G65550 179 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 160 / 6e-44 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 160 / 1e-43 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 158 / 5e-43 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024900 [exp] 366 / 3e-123 AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 169 / 3e-47 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 160 / 1e-43 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.008G024801 [exp] 152 / 6e-43 AT5G65550 63 / 3e-11 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 156 / 2e-42 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 156 / 3e-42 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G098400 [exp] 155 / 4e-42 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.002G162300 [exp] 154 / 1e-41 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G099032 [exp] 153 / 4e-41 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303600 [exp] 150 / 3e-40 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10028863 pacid=23177102 polypeptide=Lus10028863 locus=Lus10028863.g ID=Lus10028863.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAATTCACAAACTCCGGCAAAATCCGGATCCTGATGTTCCCATGGCTAGCCCACGGCCATATCTCCCCATTCCTGGAGCTTGCCAACAAGC TCATCTCCCGCCGGCCAAACTTCCACGTCTACCTCTGCTCTTCTCCAATCAATCTCGAGTCGACCACCAAACTTATCAAGCACCCTTCGCGAATCGAGCT GATAGAGCTCCATCTTCCTTCTTTACCTGACCTCCCACCTCACTCCCACACCACCAAAGGCCTCCCAGCTCACCTCATCCCAACACTGTTCAAAGCTATG GACATGGCAAGCGGTGAATTCTTCCAAATCTTGACGAAACTGTCTCCGGATTTGTTAATATGTGACTTCCTCCAGCCATGGGCACCTAAACTCGCCTTAT CCCTCCTCAAAATCCCCACCGTCTGTTTCATGACTTCCCCTGCTATTGTCTACGATTTGGCATTTACTTCCATGAACGCCTCCCCACAATTCAATGGCGC TTTCCCACTCCGTTCCAATTATGTGATCGATTATGTGGAGGCTGAGTCTACTCCTAGCCTAGCCAATCGCGTCGTTTGGTCCATGGAGCGATCTTCTACA ATGGTACTGATCAAGAGCTTTAGAGACATCGAAGCACGTTACATCGACAGAGTGTCCAAATTCATCGGCAAGTCAATGGTCACGGTTGCCCCACTCGTAC CTGATGACGACGACGACGACGAGGGAGATCAAGAAACAGATAACAATGTCATCAATTGGCTAAACAATAAAGACAAATCCTCTGTTGTGTACATATCATT CGGAAGCGAATGTTACCTGTCAACTTCTCAAATCCAGGAATTGGCTCACGCGCTTCTGATTCTTCTGGTTGAAAAAGCATACCCTATCAATTTCATATGG GTACTAAGGTTTCCTATCGGAGAAGAGTTGGGGATATCGAAGGCGCTGCCAGAAGGGTTTATGGAAGCGGTGGGGCTGGAAAATAAGGTATACATGGCGG AAGGTTGGGCACCGCAACGGAGGATTTTGAGACACGGGAACGTCGGGGGGTTTGTGAGCCACTGCGGATGGAGCTCGGTGATGGAAGCGATGAAGTACGG AGTGCCTATCGTCGGGGTGCCATTGCGCACTGATCAACCGATGAATGCTAGACTGGTGGAAGAAATTGGAGTTGGTTTGAAGGTTGAGAAGATCGAGAGG GGAGAACTGGCGAAGGTGATCGAGGAAGTCGTGGTTGGAGAAAGGAAGGTTGAGTTTAGGGATAAGGCGAAAGAGATTAAGAATTGCTTAGTCGAGAAAG GAGATCGTGACATTGACGAAGCTATTGAACGTCTAGTTCATCTTTGTAGCGAATTTTCGGAGCCATTGATCGGAGAAGAGCAGAGGTAG
AA sequence Show only first row Show all	>Lus10028863 pacid=23177102 polypeptide=Lus10028863 locus=Lus10028863.g ID=Lus10028863.BGIv1.0 annot-version=v1.0 MAEEFTNSGKIRILMFPWLAHGHISPFLELANKLISRRPNFHVYLCSSPINLESTTKLIKHPSRIELIELHLPSLPDLPPHSHTTKGLPAHLIPTLFKAM DMASGEFFQILTKLSPDLLICDFLQPWAPKLALSLLKIPTVCFMTSPAIVYDLAFTSMNASPQFNGAFPLRSNYVIDYVEAESTPSLANRVVWSMERSST MVLIKSFRDIEARYIDRVSKFIGKSMVTVAPLVPDDDDDDEGDQETDNNVINWLNNKDKSSVVYISFGSECYLSTSQIQELAHALLILLVEKAYPINFIW VLRFPIGEELGISKALPEGFMEAVGLENKVYMAEGWAPQRRILRHGNVGGFVSHCGWSSVMEAMKYGVPIVGVPLRTDQPMNARLVEEIGVGLKVEKIER GELAKVIEEVVVGERKVEFRDKAKEIKNCLVEKGDRDIDEAIERLVHLCSEFSEPLIGEEQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	0	1
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10000559 [exp]	1.4	0.9275
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	3.2	0.9094
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	3.5	0.8996
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	3.7	0.9195
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	5.3	0.9100
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	6.7	0.8916
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10016941 [exp]	8.5	0.8965
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	8.8	0.8990
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039577 [exp]	9.5	0.8825
AT3G44670			Disease resistance protein (TI...		Lus10008525 [exp]	9.6	0.8658

Compare expression of checked genes

Lus10028863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.