Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65550 144 / 7e-39 UDP-Glycosyltransferase superfamily protein (.1) AT2G43840 135 / 9e-36 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT2G43820 134 / 1e-35 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT4G34131 132 / 1e-34 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT1G05560 132 / 2e-34 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT3G50740 131 / 2e-34 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT4G34138 128 / 3e-33 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT1G05530 127 / 4e-33 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT2G18560 126 / 4e-33 UDP-Glycosyltransferase superfamily protein (.1) AT1G01420 126 / 2e-32 UGT72B3 UDP-glucosyl transferase 72B3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008956 [exp] 577 / 0 AT5G65550 189 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10028863 [exp] 567 / 0 AT5G65550 183 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1) Lus10028865 [exp] 444 / 2e-155 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10008955 [exp] 436 / 4e-152 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 263 / 6e-84 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10006280 [exp] 217 / 2e-66 AT5G65550 179 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10042242 [exp] 138 / 5e-38 AT5G65550 280 / 9e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10003897 [exp] 130 / 2e-35 AT4G01070 218 / 1e-67 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026795 [exp] 134 / 3e-35 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024900 [exp] 280 / 3e-91 AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G099032 [exp] 137 / 2e-36 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.003G210400 [exp] 136 / 4e-36 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G098966 [exp] 136 / 5e-36 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 136 / 5e-36 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 134 / 2e-35 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.007G140500 [exp] 133 / 6e-35 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.012G035800 [exp] 131 / 3e-34 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.009G098400 [exp] 130 / 8e-34 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.012G036000 [exp] 129 / 1e-33 AT3G16520 385 / 1e-130 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10028864 pacid=23177221 polypeptide=Lus10028864 locus=Lus10028864.g ID=Lus10028864.BGIv1.0 annot-version=v1.0 ATGGCAAGCTCGGATTTCTCCAAAATCTTGACGAAACTGTCTCCCGATTTGCTCATCTGTGACATCTTCCAACCCTGGGCACCTAGACTCGCCTTATCCC TCCTGAAAATCCCCACCGTCTGTTTCATGACTTCCCCCGCCATTGTCTACGACTTCGCATTCACTTCCATGAACGCCTCTGAACAATTCCATGGCTACTT CCCTCTCCGGTCAAATCACGTCACCGACGTTGAGTCTGCTCCAAGCCTCGCCAATATCTTGCTCTGGTCCATGGAGCGATCTTCTACCATGATACTAATC AAGAGCTTAACAGACATCGAAGCACATTACATCGACAGAGTGTCCAAATTGATCGGCAAGTCAATGGTCACTGTTGCCCCACTCGTACCCGACGATGATG AGGGAGATCAAGAACCAGATGATAACGAAATCATCAATTGGCTAAACAAGAAAGAAAAATCTTCCGTAGTGTACATCTCATTCGGAAGTGAATGCTACCT ATCAGCTTCTCAAATCCAGGAATTGGCTCACGCGCTTCTGATTCTTCTAGTTGAAAAAGCATGCACCGTAAACTTCATATGGGTACTGAGGTTTCCTCGC GGAGAAGAGGTGGAGATATCAGCGGCGCTGCCGGAAGGGTTTATGGATGAGGTGGGGCCGGAAAAGAAGGTATACCTGGTGGAGGGTTGGGCACCACAAC GGAGGATTCTGAGACACGGGAGCGTCGGAGGGTTTGTGAGCCACTGTGGATGGAGCTCGGTGATGGAAGCGATGAAGTACGGAGTGCCGATCGTTGGGGC GCCGCTGCGTACTGATCAGCCGATGAATGCGAGGCTGGTGGAAGAAACTGGAGTTGGTTTGAAGGTTGAGAAGATCGAGAGGGGAGAACTGGCGAAGGTG ATCGAGGAAGTTGTGGTTGGAGAAAGGAATGCTGAGTTTAGGGATAAGGCCAAGGCGATTAAGCATTGTTTGCTGGAGAAAGGAGATCGTGACATTGATG AAGCTATTAACCGTCTGCTTCATCATTGTACCGAGTTTTCGGTTTAG
AA sequence Show only first row Show all	>Lus10028864 pacid=23177221 polypeptide=Lus10028864 locus=Lus10028864.g ID=Lus10028864.BGIv1.0 annot-version=v1.0 MASSDFSKILTKLSPDLLICDIFQPWAPRLALSLLKIPTVCFMTSPAIVYDFAFTSMNASEQFHGYFPLRSNHVTDVESAPSLANILLWSMERSSTMILI KSLTDIEAHYIDRVSKLIGKSMVTVAPLVPDDDEGDQEPDDNEIINWLNKKEKSSVVYISFGSECYLSASQIQELAHALLILLVEKACTVNFIWVLRFPR GEEVEISAALPEGFMDEVGPEKKVYLVEGWAPQRRILRHGSVGGFVSHCGWSSVMEAMKYGVPIVGAPLRTDQPMNARLVEETGVGLKVEKIERGELAKV IEEVVVGERNAEFRDKAKAIKHCLLEKGDRDIDEAINRLLHHCTEFSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	0	1
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	1.0	0.9121
AT2G22590			UDP-Glycosyltransferase superf...		Lus10043446 [exp]	3.2	0.8827
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	3.5	0.8996
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	3.5	0.8937
AT5G57500			Galactosyltransferase family p...		Lus10006531 [exp]	6.4	0.8262
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10000559 [exp]	6.5	0.8985
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10026838 [exp]	7.1	0.8400
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	7.9	0.8747
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	8.9	0.8816
AT3G42770			F-box/RNI-like/FBD-like domain...		Lus10021833 [exp]	9.5	0.8613

Compare expression of checked genes

Lus10028864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.