Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49690 158 / 2e-43 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 140 / 8e-37 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G27570 139 / 1e-36 UDP-Glycosyltransferase superfamily protein (.1) AT4G34135 139 / 5e-36 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT5G65550 138 / 7e-36 UDP-Glycosyltransferase superfamily protein (.1) AT4G34138 137 / 2e-35 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT4G27560 135 / 5e-35 UDP-Glycosyltransferase superfamily protein (.1) AT1G73880 132 / 5e-34 UGT89B1 UDP-glucosyl transferase 89B1 (.1) AT2G15480 131 / 2e-33 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT5G54060 131 / 2e-33 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008955 [exp] 659 / 0 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10008956 [exp] 582 / 0 AT5G65550 189 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10028863 [exp] 581 / 0 AT5G65550 183 / 1e-52 UDP-Glycosyltransferase superfamily protein (.1) Lus10028864 [exp] 410 / 6e-142 AT5G65550 154 / 1e-42 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 335 / 9e-111 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10006280 [exp] 296 / 7e-96 AT5G65550 179 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1) Lus10014084 [exp] 167 / 2e-46 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019831 [exp] 159 / 2e-43 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10003154 [exp] 158 / 5e-43 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024900 [exp] 364 / 1e-122 AT5G65550 173 / 7e-49 UDP-Glycosyltransferase superfamily protein (.1) Potri.008G024801 [exp] 173 / 6e-51 AT5G65550 63 / 3e-11 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G098400 [exp] 161 / 4e-44 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.010G182575 [exp] 152 / 3e-41 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 151 / 8e-41 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G099032 [exp] 152 / 9e-41 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303600 [exp] 148 / 1e-39 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 147 / 3e-39 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.012G034100 [exp] 145 / 1e-38 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G303300 [exp] 145 / 2e-38 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10028865 pacid=23177334 polypeptide=Lus10028865 locus=Lus10028865.g ID=Lus10028865.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAGCCACAAACTCCGGCGAATTATTCAGGATCCTAATGTTCCCGTGGTTAGCTCACGGCCACATCTCCCCATTCCTGGAGCTCGCTAACA AGCTTGTTTCCCGCAGTCCAAACTTCCACGTCTACCTCTGCTCTTCTCCGATCAATCTCCAGTCAGCCACAGCACTCATCAAACACCCTTCACAAATGGA GCTGATAGAGCTCCATCTTCCTTCTTTACCTGACCTCCCACCTCACTCCCACACCACCAAAGGCCTCCCAGCCCACCTCATCCCAACACTGTTCAAAGCC CTAGACATGGCCAGCTCCGAATTCTCCCAAATCCTGACGGAATTATCCCCAGACCTCCTCATCTGTGACTTTTTCCAGCCCTGGGCACCTAAATTCGCTC TCTCGCTTCTCAAAATCCCTACCGTGTTGTTCATGACCAACGCCGCCTTCTCCACTGCCGTCCCCTTGACTTCCATGAAAAACACCGGTAAATTCGATGG CGTTTTCCCTCTCCGGTCAAATTATATCTTCGATTACGAGGAAGTGGAGTCTCCTAGCTTCAAGGACCGAGTGTTCCAGTCCTTGGAGAGATCCTCGCCG ATTTTACTGGTCAAGAGTTTCAGAGAGATAGAAGCAGAGTACATCGACACAGTCTCGGAGTTGTTCGGGAAATCAGTCCTCCCAATCGGACCGCTCGTTC CTGACGATGACGATGAAAATCAACAACCTGACGAAGAGATCATCAATTGGCTGAACAACAAAGGCCCATCATCTGTCGTCTACATCTCATTCGGCAGCGA ATCATATCTATCGAGATCTCAGATCGAAGAATTAGCTCATGCGCTTCTAATCCTAATTGAGAAAGCGATACCGATCAATTTCGTATGGGTGCTGAGGTTT CCTCGAGGAGAAGAGGTGGCGATATCGGAGGCACTGCCGGAAGGGTTTTTCTCGGCGGTGGGAGGAAAGGGATACATGGCCGAGGGTTGGGCCCCGCAGC GGAGGATTTTGAGACACGAGAGCGTGGGAGGGTTCGTGAGCCACTGCGGGTGGAGCTCGGTGATGGAAGGGATGAAATACGGAGTGCCGATTGTGGGGAT GCCGTTGCAGAATGATCAGTCGACGAATGCGAGTCTGGTCGAGGAAGCCGGGGTGGGATTGAAGGTCGGGGAGATTGAGAGGGGAGAATTGGCGAAGGTG ATTGAAGAAGTTGTGATCAGAAGGAATGAGATTAAGGATAAGGTTAGGGGGATTAGGGATTGTTTGCTGGAGAAAGGGGATAGCGAGATTGATGAAGCCA TTGATCGCCTGGTTCATCTTTGTAAGACGTTTTCAGTTTAG
AA sequence Show only first row Show all	>Lus10028865 pacid=23177334 polypeptide=Lus10028865 locus=Lus10028865.g ID=Lus10028865.BGIv1.0 annot-version=v1.0 MEEEATNSGELFRILMFPWLAHGHISPFLELANKLVSRSPNFHVYLCSSPINLQSATALIKHPSQMELIELHLPSLPDLPPHSHTTKGLPAHLIPTLFKA LDMASSEFSQILTELSPDLLICDFFQPWAPKFALSLLKIPTVLFMTNAAFSTAVPLTSMKNTGKFDGVFPLRSNYIFDYEEVESPSFKDRVFQSLERSSP ILLVKSFREIEAEYIDTVSELFGKSVLPIGPLVPDDDDENQQPDEEIINWLNNKGPSSVVYISFGSESYLSRSQIEELAHALLILIEKAIPINFVWVLRF PRGEEVAISEALPEGFFSAVGGKGYMAEGWAPQRRILRHESVGGFVSHCGWSSVMEGMKYGVPIVGMPLQNDQSTNASLVEEAGVGLKVGEIERGELAKV IEEVVIRRNEIKDKVRGIRDCLLEKGDSEIDEAIDRLVHLCKTFSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49690			UDP-Glycosyltransferase superf...		Lus10028865 [exp]	0	1
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	3.0	0.9117
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10026554 [exp]	4.0	0.8723
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	4.2	0.8935
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	4.6	0.8809
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	5.5	0.9045
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	7.2	0.8862
					Lus10022598 [exp]	10.0	0.8851
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10013042 [exp]	11.0	0.8711
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	12.5	0.8654
AT3G21310			Core-2/I-branching beta-1,6-N-...		Lus10009738 [exp]	13.7	0.8525

Compare expression of checked genes

Lus10028865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.