Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52060 362 / 3e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G22070 337 / 3e-114 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G32290 258 / 3e-83 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25330 256 / 1e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 159 / 3e-45 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G21310 155 / 8e-44 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 152 / 1e-42 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 148 / 6e-41 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G25870 147 / 2e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 144 / 2e-39 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008954 [exp] 640 / 0 AT3G52060 400 / 2e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10004106 [exp] 332 / 1e-111 AT5G22070 486 / 3e-172 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001503 [exp] 247 / 4e-79 AT4G32290 382 / 7e-132 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002919 [exp] 246 / 1e-78 AT5G25330 389 / 4e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10026959 [exp] 146 / 4e-40 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10002989 [exp] 146 / 6e-40 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 145 / 1e-39 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 145 / 1e-39 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 145 / 1e-39 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018600 [exp] 444 / 8e-157 AT3G52060 407 / 2e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.010G242900 [exp] 425 / 3e-149 AT3G52060 407 / 9e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G215400 [exp] 344 / 1e-116 AT5G22070 421 / 1e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G017300 [exp] 312 / 2e-104 AT5G22070 418 / 7e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 150 / 1e-41 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 149 / 2e-41 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 147 / 2e-40 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G254800 [exp] 144 / 2e-40 AT4G32290 210 / 1e-65 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 143 / 6e-39 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 142 / 9e-39 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10028866 pacid=23177207 polypeptide=Lus10028866 locus=Lus10028866.g ID=Lus10028866.BGIv1.0 annot-version=v1.0 ATGCCGTCATACTCTCCAGTTATCTATTTCTTCTCCCTTTTCCTCTCCCTCGCTCTTATCTACACCATCGCCCCTCAAATACTCCCATCCCAAAACCCCT TCTTCCACCCTCACGACGATCTCGACGACCTAGCACTCTTCAACAAGGCTCTCCACTCCGTCGACGGCCACCATAGCCACCACCACTACCAGCACAACCA CAACAACCGCCGCAGTAACCTCCGAATCTCCCGCCTCGCCACAAAAAACCCTACCCCCAAAATCGCCTTCCTCTTCCTAACGAACTCCAACCTCACCTTC GCACCTCTCTGGGACCGCTTCTTCCGCGGCCACTCCCGCTACTACAACGTCTACGTCCACGCTGATCCTTCCGCCGCCGTCCGGATTCCGAGCAGTGGAG CCTTCCAATCGAGTCTGATCCCTAGCAAGAAGACTGCGAGGGCTTCGCCTACATTAATCGCCGCCGAGAGGCGCCTCCTCGCCCGCGCGATTCTCGATGA TCCGTTGAATCTCTACTTCGCGCTAGTCTCTCAGCACTGTATACCTATCCACTCGTTTCCTTTCTTCTACCGCTCGCTTTTGGGGGATAATCCGTTAAGA GCTTTTACCTCTCTGTCTCGTCACCGGAGCTTCATCGAGATCTTATCTGAAGATCCTAATCTGCCGGAGAGGTACGTTGCTAGAGGAGAGAACGTGATGA TGCCGGAGGTCCCGTTCGAGGAGTTCCGGGTCGGGTCACAGTTTTTCGTGCTCGCTAAGCGGCACGCTGTGACTGTGTTGTCTGATAAGAAGCTGTGGAG GAAGTTTCGGTTGAAGTGCCTTAATCTGGACTCGTGTTACCCTGAGGAGCACTATTTCCCGACTCTTCTTTCCATGGAGGATCCGAGAGGGTGCAGCGGT TTCGCTTTGACGAATGTGAACTGGACTGACAGCTTCGACGGCCACCCGCGGACCTACGAAGCTCAGGAGATATCTGCCAGCCTTGTGCAGAGGTTGAGGC AGTCCAATTCCAGCTACCCATACTTTTTCGCCAGGAAATTCTCGCCGGATTGCTTGTCGCCGTTGATGGAGATGGCCGATGACGTTATTTTAAGGGACTG A
AA sequence Show only first row Show all	>Lus10028866 pacid=23177207 polypeptide=Lus10028866 locus=Lus10028866.g ID=Lus10028866.BGIv1.0 annot-version=v1.0 MPSYSPVIYFFSLFLSLALIYTIAPQILPSQNPFFHPHDDLDDLALFNKALHSVDGHHSHHHYQHNHNNRRSNLRISRLATKNPTPKIAFLFLTNSNLTF APLWDRFFRGHSRYYNVYVHADPSAAVRIPSSGAFQSSLIPSKKTARASPTLIAAERRLLARAILDDPLNLYFALVSQHCIPIHSFPFFYRSLLGDNPLR AFTSLSRHRSFIEILSEDPNLPERYVARGENVMMPEVPFEEFRVGSQFFVLAKRHAVTVLSDKKLWRKFRLKCLNLDSCYPEEHYFPTLLSMEDPRGCSG FALTNVNWTDSFDGHPRTYEAQEISASLVQRLRQSNSSYPYFFARKFSPDCLSPLMEMADDVILRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	0	1
AT4G18593			dual specificity protein phosp...		Lus10022402 [exp]	1.7	0.9118
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	3.5	0.9141
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	4.0	0.8874
AT2G01680			Ankyrin repeat family protein ...		Lus10021814 [exp]	4.2	0.8863
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	4.2	0.9197
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Lus10009812 [exp]	4.2	0.9040
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10033908 [exp]	5.2	0.8943
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10040925 [exp]	5.3	0.9032
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	6.3	0.8990
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	8.2	0.9075

Compare expression of checked genes

Lus10028866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.