Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04850 400 / 2e-139 VPS60.2 SNF7 family protein (.1.2) AT3G10640 396 / 1e-137 VPS60.1 SNF7 family protein (.1.2) AT5G05920 270 / 1e-86 DHS, EDA22 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) AT4G29160 65 / 7e-12 SNF7.1 SNF7 family protein (.1.2.3) AT2G19830 57 / 6e-09 VPS32, SNF7.2 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008953 [exp] 468 / 9e-166 AT5G04850 404 / 9e-145 SNF7 family protein (.1.2) Lus10043454 [exp] 409 / 5e-142 AT5G04850 383 / 6e-136 SNF7 family protein (.1.2) Lus10034131 [exp] 406 / 7e-142 AT5G04850 374 / 3e-133 SNF7 family protein (.1.2) Lus10042728 [exp] 286 / 2e-92 AT5G05920 629 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) Lus10029688 [exp] 284 / 1e-86 AT5G05920 657 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) Lus10032705 [exp] 52 / 3e-07 AT2G19830 321 / 1e-112 SNF7 family protein (.1) Lus10012921 [exp] 49 / 2e-06 AT2G19830 318 / 1e-111 SNF7 family protein (.1) Lus10032793 [exp] 44 / 2e-05 AT5G05920 99 / 3e-26 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) Lus10020239 [exp] 0 / 1 AT5G05920 181 / 2e-55 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242700 [exp] 423 / 4e-148 AT3G10640 405 / 1e-145 SNF7 family protein (.1.2) Potri.008G018300 [exp] 410 / 5e-143 AT3G10640 404 / 5e-145 SNF7 family protein (.1.2) Potri.003G186900 [exp] 273 / 2e-87 AT5G05920 651 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) Potri.018G069900 [exp] 47 / 8e-06 AT4G29160 222 / 1e-73 SNF7 family protein (.1.2.3) Potri.005G067700 [exp] 42 / 0.0005 AT5G09260 248 / 7e-84 vacuolar protein sorting-associated protein 20.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0085 [flax] [poplar] FAD_DHS PF01916 [flax] [poplar] DS Deoxyhypusine synthase CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10028867 pacid=23177339 polypeptide=Lus10028867 locus=Lus10028867.g ID=Lus10028867.BGIv1.0 annot-version=v1.0 ATGGGCTCCACATGTCGTGTTGCCTCATTTCCAGCCTGGTACTTCGTTCTTCGATCACATATCTCCTTCGTCCGACCTTCGTTTGAACTCCAGTTGATCT CGTTGGAATCATCTTATCGTCCTCTATCCATCGGAAGGGAAGTCACAAAAAATCCAGGGCTACGACTTCAATCAAGGAGTGCGCTACCCGAAGCTACTCC AGTCAATGCTCTCAACTGGTTTCCAAGCTTCCAACCTCGCTGGACTGGAGACTTGCTGTTGAAGCTGGACTGGAGACTTGCTAATGAAGTCATTGCTGAA AACTGCAAGGACGTAGAGAAAGACCCTGCTTTCAGACAGTCCGTACGGTGCAAGATATTCCTGGGTTTCACCTCAAATCTGATATCTTCCGGAGTCAGGG AAACCATTAGATACCTTGTGCAACATAAGATGGTTGATGTGTTAGTGACGACGGCAGGTGGGATAGAGGAAGATATACTCAAATGCTTAGCCCCAACTTA CAGGGGAGACTTCTCTTTAAAGGGAGCTCAATTGCGATCTAAAGGGTTGAATCGCATCGGCAACTTACTCGTTCCTACTGACAACTACTGTCGTTTCGAA CAATGGATCATTCCCATTTTCGACAAGATGTTACACGAACAAACTCAGGATGGTATCCTATGGACACCGTCGACTTTGATTGCCCGACTGGGAAAAGAAA TTAACTGCGAAACATCGTATCTTTACTGGGCATTCAAGAAACTCAATCAATCAAGCTTCCTTAGCAGCAGCTGCGGAAAGATGCAGAGGATATTCGGCTC CAAGAAGAACAAAGATCCTTCTCCTTCAATCTCTGATGCGTCCGATAAGATTAACAAAAGGGGAGATACTGTGGAAGAGAAGATAAAAAAGCTGGATGCT GAACTCAGCAGATACAAAGAACAGATTAAGAAAACACGGCCAGGGCCTGCTCAGGAAGCCATCAAAGCACGTGCCATGAGGGTTCTTAAGCAGAAACGCA TGTATGAGGGTCAGCGTGACATGCTCTACAACCAAACTTTTAACCTTGATCAAGTTGCTTTCGCTGCCGAGGGCATTAAAGATGCTCAACAAACTATGTC GGCTCTGAAGTCTGCCAACAAGGAGTTGAAAGGGATGATGAAAACTGTCAAGATTCAAGATATTGATAACTTGCAAGATGAAATGATGGACCTAATGGAT GTTAGTAATGAAATCCAAGAGACCCTGGGAAGAAGCTATAATGTACCTGATGATATTGACGAAGATGAACTCATGGGTGAACTTGATGCTTTAGAGGCAG ATATGGGGTTCGAAACTGAAGCAGATGGAGTGCCATCGTATTTGCAACCTGACAAAGAACCAGATCTCGATGCAGAACTAAACATGCCTTCAGCGCCCAT GGGACATGCTTCTAGACCCAATGCCCAGGGTGAGGATGATCTGGCTCTGCCCTCAGTTCCACGAGCGACGCTTCGTGGCTGA
AA sequence Show only first row Show all	>Lus10028867 pacid=23177339 polypeptide=Lus10028867 locus=Lus10028867.g ID=Lus10028867.BGIv1.0 annot-version=v1.0 MGSTCRVASFPAWYFVLRSHISFVRPSFELQLISLESSYRPLSIGREVTKNPGLRLQSRSALPEATPVNALNWFPSFQPRWTGDLLLKLDWRLANEVIAE NCKDVEKDPAFRQSVRCKIFLGFTSNLISSGVRETIRYLVQHKMVDVLVTTAGGIEEDILKCLAPTYRGDFSLKGAQLRSKGLNRIGNLLVPTDNYCRFE QWIIPIFDKMLHEQTQDGILWTPSTLIARLGKEINCETSYLYWAFKKLNQSSFLSSSCGKMQRIFGSKKNKDPSPSISDASDKINKRGDTVEEKIKKLDA ELSRYKEQIKKTRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFAAEGIKDAQQTMSALKSANKELKGMMKTVKIQDIDNLQDEMMDLMD VSNEIQETLGRSYNVPDDIDEDELMGELDALEADMGFETEADGVPSYLQPDKEPDLDAELNMPSAPMGHASRPNAQGEDDLALPSVPRATLRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	0	1
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	1.0	0.9147
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	1.4	0.9002
AT5G16110			unknown protein		Lus10009170 [exp]	1.7	0.8964
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028347 [exp]	2.2	0.8716
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10018442 [exp]	3.5	0.8767
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	7.9	0.8650
AT5G16110			unknown protein		Lus10028474 [exp]	8.0	0.8625
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	8.1	0.8658
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	8.5	0.8574
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10032890 [exp]	10.1	0.8392

Compare expression of checked genes

Lus10028867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.