Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26230 457 / 2e-163 uricase / urate oxidase / nodulin 35, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008952 [exp] 624 / 0 AT2G26230 447 / 5e-159 uricase / urate oxidase / nodulin 35, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242600 [exp] 535 / 0 AT2G26230 460 / 8e-165 uricase / urate oxidase / nodulin 35, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0334 [flax] [poplar] THBO-biosyn PF01014 [flax] [poplar] Uricase Uricase
Representative CDS sequence Show only first row Show all	>Lus10028868 pacid=23177157 polypeptide=Lus10028868 locus=Lus10028868.g ID=Lus10028868.BGIv1.0 annot-version=v1.0 ATGGAGCAGCGAATGACCAAGGAGCTGGACGGCTTCCACTTCGAGCAGAAGCACGGCAAGGCAAGGGTGAGGGTCGCTAGAGTCTGGCGGAGCAATAGCG GCGGCGATCAGTTCGTTGTGGAGTGGAATGTCAACATCAGTCTTCTCTCCGACGCAGTCAACGCTTATGTTCGCGATGACAACTCCGACATCGTCGCCAC TGACACCATGAAGAACACCGTGTATGTGAAAGCTAAGGAGTGTGCAGAACAGCTTTCAGCAGAAGAGTTTGCAATTTTGCTTGCCAAGCATTTCACTTCG TTCTACCCGCAGGTAACATCAGCAATTGTTAAGATCATTGAGAAGCCATGGGAGCGTATCAACTTAAATGGGCAACCACATGAACACGGTTTCAAACTTG GAAGCGAGAAGCATACAGTAGAGGCAGTACTAAAGAAATCAGGTGGATTGCAATTGACTTCTGGCATTGAAGGGCTGTCTGTACTGAAGACTACCCAGTC CGGCTTTGAAGGGTTTGTTAGGGATAAATATACTGCTCTTCCCGAGACTCGCGAACGGATGCTTGCAACAGAAGTCACTGCATCATGGAGGTACTCGTAT GACTCTGTCTCCAGCGTCCCCCAGAAGCCTCTTTACTTCAATGAGAGGTATAAGGATGTGAAGGATGCTGTGCTCAACACTTTCTTTGGTCCTCCAAAGG GAGGAGTATATAGTGCATCAGTTCAGAGAACACTTTTCCAAATAGCAAAGGCTGTGTTGATCAGATTCCCTGACATATCGTCTATCCAGCTGAAAATGCC AAACATCCACTTCATACCAGTCAACATATCAAGCAAGGATAACACGATTGTGAAGTTTAACGATGACGTATATCTGCCTACGGACGAGCCACATGGAACA ATAGAAGCAACTCTGAACCGCTTCTGGGCAAGAATGTAG
AA sequence Show only first row Show all	>Lus10028868 pacid=23177157 polypeptide=Lus10028868 locus=Lus10028868.g ID=Lus10028868.BGIv1.0 annot-version=v1.0 MEQRMTKELDGFHFEQKHGKARVRVARVWRSNSGGDQFVVEWNVNISLLSDAVNAYVRDDNSDIVATDTMKNTVYVKAKECAEQLSAEEFAILLAKHFTS FYPQVTSAIVKIIEKPWERINLNGQPHEHGFKLGSEKHTVEAVLKKSGGLQLTSGIEGLSVLKTTQSGFEGFVRDKYTALPETRERMLATEVTASWRYSY DSVSSVPQKPLYFNERYKDVKDAVLNTFFGPPKGGVYSASVQRTLFQIAKAVLIRFPDISSIQLKMPNIHFIPVNISSKDNTIVKFNDDVYLPTDEPHGT IEATLNRFWARM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26230			uricase / urate oxidase / nodu...		Lus10028868 [exp]	0	1
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	1.4	0.9684
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10021088 [exp]	1.7	0.9723
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	6.5	0.9672
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	8.1	0.9596
					Lus10002555 [exp]	8.7	0.9652
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039689 [exp]	8.8	0.9482
AT3G52870			IQ calmodulin-binding motif fa...		Lus10035595 [exp]	10.1	0.9524
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	13.0	0.9543
AT3G14880			unknown protein		Lus10042453 [exp]	13.2	0.9585
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	13.4	0.9562

Compare expression of checked genes

Lus10028868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.