Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16010 116 / 8e-33 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G38050 56 / 6e-10 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT1G72590 51 / 4e-08 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G16530 46 / 3e-06 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008951 [exp] 159 / 4e-49 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 67 / 2e-14 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10021127 [exp] 66 / 4e-14 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10042055 [exp] 51 / 3e-08 AT2G16530 347 / 8e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10028371 [exp] 50 / 1e-07 AT2G16530 336 / 4e-115 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10041820 [exp] 0 / 1 AT2G16530 289 / 2e-96 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G245200 [exp] 123 / 3e-35 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 119 / 1e-33 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 117 / 4e-33 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012700 [exp] 116 / 1e-32 AT5G16010 278 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245332 [exp] 115 / 2e-32 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245266 [exp] 114 / 5e-32 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.016G110600 [exp] 66 / 2e-13 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.013G134433 [exp] 64 / 7e-13 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 61 / 9e-12 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.004G163600 [exp] 54 / 3e-09 AT2G16530 418 / 6e-147 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF02544 [flax] [poplar] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10028869 pacid=23177340 polypeptide=Lus10028869 locus=Lus10028869.g ID=Lus10028869.BGIv1.0 annot-version=v1.0 ATGCTGTTGGCCTACGCTCCTGCCTTCGTCTCCGCTCTCTCTTCCTTAATTCTGCTCCTCATCAACAACAATGGCGGTAGTGGTGATCGATCATCGGGTG TTAGTAGGCTCCTTTTGGTTAATTCCGCTCTCACCATTCACTTCCTCAAACGGATTCTCGAGAGCAGCAACAAGGAGGAGGAGAAGAACAAAAGTAAAGA TCAGTACAAGATCCCAAAGGGAGGGATGTTCGACCTTGTGATCTGCCCTCATTACCTTTTCGAGATAATGTTCTATGGCATCTCATTCATGTCTCAGACG CTATATTCATTCGCTGTCGCCATCGGATCAACTGCTTACTTGACTGGAAGGAGCTACGCTACAAGGAAATGGTACCTCTCCAAGTTTGATGATTTCCCTC CCTCTGTCAAGGCTCGTATCCCTTTCATTTTCTAG
AA sequence Show only first row Show all	>Lus10028869 pacid=23177340 polypeptide=Lus10028869 locus=Lus10028869.g ID=Lus10028869.BGIv1.0 annot-version=v1.0 MLLAYAPAFVSALSSLILLLINNNGGSGDRSSGVSRLLLVNSALTIHFLKRILESSNKEEEKNKSKDQYKIPKGGMFDLVICPHYLFEIMFYGISFMSQT LYSFAVAIGSTAYLTGRSYATRKWYLSKFDDFPPSVKARIPFIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10028869 [exp]	0	1
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10029716 [exp]	3.5	0.8967
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10027871 [exp]	14.4	0.8599
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	16.2	0.8455
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039302 [exp]	16.9	0.8227
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10026089 [exp]	17.1	0.8675
AT5G19940			Plastid-lipid associated prote...		Lus10026221 [exp]	19.9	0.8662
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10008696 [exp]	20.2	0.7859
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	20.6	0.8598
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10010419 [exp]	30.5	0.8315
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	30.6	0.8155

Compare expression of checked genes

Lus10028869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.