Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55570 110 / 1e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008950 [exp] 188 / 1e-62 AT5G55570 114 / 1e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G085501 [exp] 0 / 1 AT5G55570 114 / 1e-31 unknown protein Potri.011G085700 [exp] 0 / 1 AT5G55570 68 / 2e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028870 pacid=23177224 polypeptide=Lus10028870 locus=Lus10028870.g ID=Lus10028870.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTCTTCTGCTTCTTGCGCCAATAGAATCTAGGGCCATTCGTCCACTGAATGGATTGAAGCCAGAAGCCAATTGGACAAGACAGCAAGGGA AAAGAAGAAGAAGAAGAAGAGGTTCAAGGATTGCTGCAATGGATGCGGATTTAGTAGTATCGACAACCGCCGTAACGCAGCAGGCGGTTACGTGGGAGAT TGCGGTGGGGGCTATAGCCGGAGTGACGCCGTTCGTGGTTGCCGGGATAGAGTTCAGCAAAAGAATAATAGCACAGAGAAGATGTGAATTGTGCGATGGG TCAGGGCTGATTCTAATGGATAATGATGATGATGATAAGAAAGAGTATTGTCGCTGCCCAGGATGTGGTGGATTTCTACCATGGCAGTCCTGGAAAAGAT TCTTCACCGGCTAA
AA sequence Show only first row Show all	>Lus10028870 pacid=23177224 polypeptide=Lus10028870 locus=Lus10028870.g ID=Lus10028870.BGIv1.0 annot-version=v1.0 MASPLLLLAPIESRAIRPLNGLKPEANWTRQQGKRRRRRRGSRIAAMDADLVVSTTAVTQQAVTWEIAVGAIAGVTPFVVAGIEFSKRIIAQRRCELCDG SGLILMDNDDDDKKEYCRCPGCGGFLPWQSWKRFFTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55570			unknown protein		Lus10028870 [exp]	0	1
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	2.2	0.8981
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10019884 [exp]	12.2	0.8834
AT1G64680			unknown protein		Lus10001667 [exp]	12.7	0.8944
AT5G52420			unknown protein		Lus10039248 [exp]	13.6	0.8892
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	15.9	0.8809
					Lus10014003 [exp]	17.5	0.8302
AT5G57345			unknown protein		Lus10001632 [exp]	17.9	0.8834
AT1G76110	ARID		HMG (high mobility group) box ...		Lus10005636 [exp]	18.5	0.8178
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	24.9	0.8721
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	26.4	0.8787

Compare expression of checked genes

Lus10028870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.