Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11910 849 / 0 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 847 / 0 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G58250 115 / 7e-28 TRAF-like family protein (.1) AT3G58360 98 / 4e-22 TRAF-like family protein (.1) AT3G58270 94 / 2e-20 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G58210 93 / 4e-20 TRAF-like family protein (.1) AT3G58340 92 / 8e-20 TRAF-like family protein (.1) AT3G58350 88 / 1e-18 RTM3 RESTRICTED TEV MOVEMENT 3 (.1) AT3G58410 88 / 2e-18 TRAF-like family protein (.1) AT2G05420 85 / 1e-17 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008949 [exp] 1067 / 0 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 977 / 0 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 970 / 0 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10029309 [exp] 836 / 0 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 193 / 5e-56 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3) Lus10013378 [exp] 121 / 9e-28 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1) Lus10019772 [exp] 113 / 4e-25 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10025569 [exp] 105 / 1e-23 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10027030 [exp] 97 / 1e-21 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G245100 [exp] 943 / 0 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 937 / 0 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 900 / 0 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 878 / 0 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.003G103200 [exp] 82 / 1e-16 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.008G163300 [exp] 85 / 2e-16 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.001G130700 [exp] 82 / 2e-16 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.010G075000 [exp] 84 / 3e-16 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.017G049200 [exp] 69 / 3e-12 AT3G17380 240 / 1e-77 TRAF-like family protein (.1) Potri.005G179500 [exp] 69 / 2e-11 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10028871 pacid=23177299 polypeptide=Lus10028871 locus=Lus10028871.g ID=Lus10028871.BGIv1.0 annot-version=v1.0 ATGCTGGTGCCCCAGACTGACTTTGTCGATGGTCCTCAGCCAATGGAAGTAGTACCAGCAGAACCAGCAACCACAGCTGATGCTCAGTCAGTCGTCGATG ATCCACCATCAGGAAGGTTTACCTGGACAGTTGACAACTTTGCAAGGCTCAACACCAAGAAATTGTATTCTGATGTTTTTCTTGTTGGAGGTTATAAATG GCGGATACTGGTTTTTCCCAAGGGTAACAATGTGGACCATCTGTCCATGTACTTAGATGTTGCAGACTCTTCAACTCTGCCATATGGTTGGAGTAGATAT GCTCAGTTCAGCTTGACTGTTGTTAATCAAATACATCAAAAGTGCTCAGTTCGAAAAGAGGCAGATATCGCTGTCCGGAGAATTACTGATTATTGGTCCC ATGATTCAAAAAAAGAGACTGGTTATGTTGGACTTAAAAACCAAGGAGCTACTTGCTACATGAACTCTCTTCTTCAGACACTCTACCACATTCCCTACTT CAGAAAGGCTGTGTATCACATGCCAACAACTGAGAATGACATGCCAACAGGAAGCATTCCTCTTGCTTTGCAGAGTTTGTTCTATAAACTTCAATACAGT GACACTAGTGTAGCAACAAAAGAGCTGACAAAGTCTTTTGGATGGGACACTTACGATTCGTTCATGCAGCATGATGTGCAAGAACTTAACAGGGTTCTTA GCGAAAAGCTTGAAGACAAAATGAAGGGTACAGTTGTGGAGGGAACAATACAACAGTTGTTTGAAGGGCACCATATGAATTACATAGAGTGCATAAATGT GGATTACAAGTCAACTAGAAAGGAATCATTTTATGGTAAAGATTACGATCCATATAACTTTTGTTACAGAGACTTGTCTCGAGCTAAATCATTTTGTCAT TCTGTTTTATCAGATCTTCAACTTGATGTCAAAGGTTGTCGAGATGTCTATGCCTCTTTTGACAAGTACGTTGAAGTAGAACGTCTTGAAGGGGATAACA AGTATCATGCCGAACAGCATGGTTTACAGCTAATTCAGTTGGGCATATGGTTCCTTCTATTTCTAATCCATATGGTTTTTTCGTCTGTTAGTGTTTTGGT TCACAGTGGTGGTGTGCATGGTGGACACTATTATGCGTATATCAGACCAACTCTTTCAGATCAATGGTTCAAGTTTGATGATGAGCGTGTAACCAAAGAG GATATGAAAAGAGCACTAGATGAGCAGTATGGCGGTGAAGAAGAGGTTGCACGTGGTGAGGATCTTAATGAACAGATTGGGAAGGATATTTATTTTGATC TTGTTGATCATGACAAAGTTCGCAGCTTTCGAATCCAGAAGCAGATGCCCTTCACCCTTTTCAAGGAAGAAGTTGCAAAAGAGTTTGGTATACCAGTTCA ATTTCAACGTTTCTGGCTATGGGCCAAGCGACAGAACCATACATACCGTCCAAATCGCCCTTTGACTCCTCAAGAAGAAGCACAGTCTGTTGGGCAATTG AGAGAAGTATCGAACAAAGCAAATAATGCAGAGCTGAAATTATTTCTGGAAGTGGAACTGGGACCAGATCTGCGTCCTACTGCTCCTCCTGACAGGACTA AGGAGGATATTTTGCTGTTCTTTAAACTATATGACCCACTGAAAGAAGAACTCAGGCACTTCCCTTGTCTGTACATCGGGTCTATGTTTGTAAAGGGCAG TGGAAAGCCGATGGAGATTTTGACCAAGTTAAATGAAATGGCTGGCTATGCTCCCAACCAAGAGATTGAGATCTATGAGGAGATAAAGTTTGAACCTCAT GTCATGTGTGAACCCATTGACAAGATGATTGCATTTCGCTCTAGCCAGCTTGAAGACGGAGACATAGTCTGCTTTCAGAAGCCCCCTTCTGGGTGTGGGG AACCATGCCGCTATCCTGATGGCGTCCGCTTTCGATCATTAGAGAAACCGAAAGAGGATAAATTCTCCTTAGAACTGTCAAAGCTTCACACTTATGATGA TGTTGTTGAAAGACTAGCTGGTCATCTTGGGTTGGATGACCCATCCAAAATTAGGCTTACCTCTCATAATTGTTACTCCCAGCAACCTAAACCTCAACCC ATCAAATACCGAGGATTAGATCATCTGGCTGATATGCTAGTGCATTACAACCAGACATCTGACATTCTATACTATGAAGTGCTTGATATCCCTCTACCAG AGCTGCAAGGTCTCAAAACTTTGAAAGTTGCATTCCACCATGCAAGCAAGGATGAGGTAGTAATTCATACTATTAGACTGCCAAAGCAGAGTACTGTTGG TGATGTCATCAATGACCTCAAAACCAAGGTAGAGTTGTCTCACCCCAATGCTGAACTTCGATTGCTTGAGGTGTTCTATCACAAGATATACAAGATCTTT CCACCCAATGAGAAGATTGAGAATATCAATGACCAATACTGGACACTTCGTGCAGAGGAGGTCCCTGAAGAGGAGAAACAGATTGGCCCTGACGACCGTT TGATTCACGTGTATCATTTCATGAAGGACACAGCTCAAAACCAGCAAGTTCAAAATTTCGGAGAACCATTTTTCCTGGTAATCCGTGTGGGGGAGACCCT AGCTGAAGTGAAAGTTCGTATTCAGAAAAAATTGCAGGTTCCTGATGAGGAATTTTCGAAGTGGAAGTTTGCTTTTCTGTCGCTTGGCCGGCCTGAGTAC CTTGAAGATGGTGATGTTGTTTCTGCCCGATTTCAAAGAAGGGACGTATATGGTGCTTGGGAGCAGTATCTAGGACTGGAGCATGCTGATAGTGCTCCTA AGAGATCATATGCAGCTAACCAGGTAGGTGGTGGTATTTCACGTAGTAGTTGTCAAGGATCGCAAAAGATTGTGTTGAGCTAG
AA sequence Show only first row Show all	>Lus10028871 pacid=23177299 polypeptide=Lus10028871 locus=Lus10028871.g ID=Lus10028871.BGIv1.0 annot-version=v1.0 MLVPQTDFVDGPQPMEVVPAEPATTADAQSVVDDPPSGRFTWTVDNFARLNTKKLYSDVFLVGGYKWRILVFPKGNNVDHLSMYLDVADSSTLPYGWSRY AQFSLTVVNQIHQKCSVRKEADIAVRRITDYWSHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPTGSIPLALQSLFYKLQYS DTSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYGKDYDPYNFCYRDLSRAKSFCH SVLSDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQHGLQLIQLGIWFLLFLIHMVFSSVSVLVHSGGVHGGHYYAYIRPTLSDQWFKFDDERVTKE DMKRALDEQYGGEEEVARGEDLNEQIGKDIYFDLVDHDKVRSFRIQKQMPFTLFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTPQEEAQSVGQL REVSNKANNAELKLFLEVELGPDLRPTAPPDRTKEDILLFFKLYDPLKEELRHFPCLYIGSMFVKGSGKPMEILTKLNEMAGYAPNQEIEIYEEIKFEPH VMCEPIDKMIAFRSSQLEDGDIVCFQKPPSGCGEPCRYPDGVRFRSLEKPKEDKFSLELSKLHTYDDVVERLAGHLGLDDPSKIRLTSHNCYSQQPKPQP IKYRGLDHLADMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHASKDEVVIHTIRLPKQSTVGDVINDLKTKVELSHPNAELRLLEVFYHKIYKIF PPNEKIENINDQYWTLRAEEVPEEEKQIGPDDRLIHVYHFMKDTAQNQQVQNFGEPFFLVIRVGETLAEVKVRIQKKLQVPDEEFSKWKFAFLSLGRPEY LEDGDVVSARFQRRDVYGAWEQYLGLEHADSAPKRSYAANQVGGGISRSSCQGSQKIVLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10028871 [exp]	0	1
AT1G50410			SNF2 domain-containing protein...		Lus10013452 [exp]	1.0	0.9467
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024282 [exp]	1.7	0.9447
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030848 [exp]	3.5	0.9426
					Lus10019384 [exp]	4.6	0.9267
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	4.9	0.9376
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10015655 [exp]	5.3	0.9356
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10003868 [exp]	7.6	0.9460
AT5G05520			Outer membrane OMP85 family pr...		Lus10040946 [exp]	7.9	0.9098
AT4G12750			Homeodomain-like transcription...		Lus10012302 [exp]	8.9	0.9271
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	11.7	0.9275

Compare expression of checked genes

Lus10028871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.