Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27620 276 / 3e-91 unknown protein AT4G27610 268 / 2e-88 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008948 [exp] 591 / 0 AT4G27620 333 / 6e-114 unknown protein Lus10043458 [exp] 440 / 1e-155 AT4G27610 343 / 6e-118 unknown protein Lus10034127 [exp] 415 / 4e-144 AT4G27610 330 / 7e-111 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042700 [exp] 402 / 7e-141 AT4G27610 403 / 2e-141 unknown protein Potri.013G076900 [exp] 381 / 2e-132 AT4G27610 339 / 5e-116 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028872 pacid=23177209 polypeptide=Lus10028872 locus=Lus10028872.g ID=Lus10028872.BGIv1.0 annot-version=v1.0 ATGAGACCAAGATCAAATGGAGTTGCTAGGGGTCAGAAAAGGATTGACGGTGGAGGACCAGGTTGGATTTTAATCGCTGGTGGTGCCTTGTTAAGTACGT TGTCAATCCGCCTTGGCTGCAAGCTGAAGCAGACTCTCGATTCTAGGAGGGAAGCGAATGCTAGGAATGAGAAGTTGTCTGATCGAAGGAGATCACCAGG CCGCCACATGCATTCAAATATGTACGCATTTACACAAGATGATGATCATTGTTTTGATTCTGCTTCTGGGAATGAAGGCATTGATGAAGCGAAATACCCT TCTAATGATCAGACACTGTCTGAAACTGATGGCGCTCTCCCTTTGGTCGCGGTTAATGCCCAAGAATACCCAAGAGAGAACGGGGTTACATGGGTTTCAT CTCTCGATCGTCTCGAGTTGCCTCCCAAGCCATATTACCAGTCAAACGGCTCGGACTCGCCGTGTGTCTCTGATTCTGGTTCAGACATATTTAGCAAGCG AGAAGTGATACAAAAGCTGAGACAACAACTGAAAAGAAGGGATGACATGATAATCGAGATGCAGGATCAGATCACGGAGCTGCAGAACTCAATCAGTTCT CAACTCGTAATTTCCAGTAGCTTGCAGTCTCAGCTTGATGCAGCCAACAAGGATCTCTTAGGTTCCGAGATAGAAATCCAGAGGCTGAGAAAGGCAATTG CTGACCACTGTTTGAAACATGCACATGTTGATGGAAAAGCTTCAGTCGTCAATAACAATAACGTCTGGTCATTACCTGAGGTATCAAATGGCCATGCAAA CGGGTATTCTGATGCTGACAGCACCACATCTGAGTTCCCAGAAAAGGTGAGGATTGATGCGGAGAAGATGGAGATGCTTAAAAGGGAAGTAGGAGAACTG AAGGAAGTATTGGAAGGGAAGGAATACTTGATGCAGAGCTACAAGGAGCAGAAATCAGAGCTTTCAGTGAAGATCAAGGAGCTGCAGCAAAGATTGGATG CTCAGCTACCCAACATCTTGTAG
AA sequence Show only first row Show all	>Lus10028872 pacid=23177209 polypeptide=Lus10028872 locus=Lus10028872.g ID=Lus10028872.BGIv1.0 annot-version=v1.0 MRPRSNGVARGQKRIDGGGPGWILIAGGALLSTLSIRLGCKLKQTLDSRREANARNEKLSDRRRSPGRHMHSNMYAFTQDDDHCFDSASGNEGIDEAKYP SNDQTLSETDGALPLVAVNAQEYPRENGVTWVSSLDRLELPPKPYYQSNGSDSPCVSDSGSDIFSKREVIQKLRQQLKRRDDMIIEMQDQITELQNSISS QLVISSSLQSQLDAANKDLLGSEIEIQRLRKAIADHCLKHAHVDGKASVVNNNNVWSLPEVSNGHANGYSDADSTTSEFPEKVRIDAEKMEMLKREVGEL KEVLEGKEYLMQSYKEQKSELSVKIKELQQRLDAQLPNIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27620			unknown protein		Lus10028872 [exp]	0	1
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	7.1	0.8427
AT5G52420			unknown protein		Lus10039249 [exp]	7.3	0.8078
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10040631 [exp]	10.0	0.8324
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10026638 [exp]	11.0	0.8287
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	15.7	0.8005
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	20.9	0.7947
					Lus10040882 [exp]	21.4	0.8353
AT5G10310			unknown protein		Lus10025740 [exp]	25.5	0.7789
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10009146 [exp]	28.5	0.7205
AT3G15110			unknown protein		Lus10009195 [exp]	28.8	0.8332

Compare expression of checked genes

Lus10028872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.