Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04930 1605 / 0 ALA1 aminophospholipid ATPase 1 (.1) AT3G27870 689 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 680 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT1G17500 674 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 670 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 664 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 664 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 660 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G72700 653 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 647 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008947 [exp] 2198 / 0 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008945 [exp] 1870 / 0 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1) Lus10033406 [exp] 1859 / 0 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10034872 [exp] 1858 / 0 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028875 [exp] 1858 / 0 AT5G04930 1694 / 0.0 aminophospholipid ATPase 1 (.1) Lus10022238 [exp] 685 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 673 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10006881 [exp] 667 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 666 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246200 [exp] 1730 / 0 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014600 [exp] 1716 / 0 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 1674 / 0 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.006G109200 [exp] 1289 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.016G138000 [exp] 868 / 0 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G039900 [exp] 683 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 682 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.003G043300 [exp] 657 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 643 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 633 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10028873 pacid=23177325 polypeptide=Lus10028873 locus=Lus10028873.g ID=Lus10028873.BGIv1.0 annot-version=v1.0 ATGGATTCACCACCTTCTCCAATCCCGTCGGAGAGCCTCTTGAACGATGATGCCTTCTCAAGGAGAAATGCTTCTTCAAGAGCAGGTTCAACCATGGAGG TTGTTTTCAGTGATATGGAGCTTAAACCTGTGATGTATGGATCCAAGAAGGCTGATCCAGAGGTGTATACTATGTCTCAAAGGGAGATCAACGAAGAAGA TGCTAGGTTTGTTTATATAAATGACCCTGGTAGGACGAATGAGAAATGTGAGTTCGCTAGGAACTCCATTAGCACTGCAAAATACTCAGTTTTTTCATTC TTGCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCATACATTTATTTCCTCATAATAGCCGTCCTCAATCAGTTGCCTCAGCTTGCTGTTTTTGGCC GTGGAGCTCCTCTTGTGCCACTTGCCTTTGTGCTGCTAGTTACAGCAATTAAGGATGCTTATGAGGATTGGAGAAGGCACAAGGCAGATAAGATTGAGAA CAATCGATTTGCTTCTGTTTTGTTGAATGGTCATTTCCAACAGAAGAAATGGAAGCATATTCAGGCTGGCGAAATAATCAAGGTCGTAGCCAATGGTACT CTTCCTTGTGATATGGTATTGCTCTCCACCAGTGAGCCTACTGGGGTTGCTTATGTGCAGACTATCAACTTGGATGGAGAGTCGAACTTAAAGACCCGGT ATGCAAAGCAGGAAACTATTTCTTGGAATCCTGAGAGTGGAGAAATGCTTACCGGCCTGATCAAGTGTGAGAAACCTAACAGGAACATTTATGGATTCCA AGGGAACATGGAGATTGATGGGAAACGCCTGTCTCTTGGACCTTCGAATATTCTTCTTCGAGGCTGTGACCTGAAGAATACTGCTTGGGTTCTTGGGGTC GTTGTGTATTGTGGACCTGAGACCAAAGCTATGCTTAATAGTTCAGGGTCCCCTTCTAAGAGAAGCCGGCTCGAGATACGGATGAACTTCGAAATCATCA TGCTCTCTTTCTTTCTTTTTATCTTGTGTACAGCTGTATCCGTATGTGCTGCTGTATGGTTGAGGCGCCACAAGGATGAGTTGGATACTATGCCTTTTTA CAGGAGGAAGGATTTCAATGAGGCTGACCCGCGTAACTACAATTATTATGGGTGGGGAGTGGAGATATTATTCACATTCCTGATGGCAGTAATTGTGTTC CAGGTCATGATTCCTATTTCTCTGTACATCTCTATGGAGCTTGTTCGGGTTGGTCAGGCCTATTTCATGACTCGAGATACAGAAATGTATGATGAGACAT CGGATTCGAGGTTTCAGTGCCGAGCTTTGAATATAAACGAAGATCTAGGGCAGATAAAGTATGTATTCTCTGACAAAACTGGGACACTTACGGAGAACAG GATGGAATTTATGTGTGCAAGCATAGGGGGCGTAGATTACAGTGGTGCTATGGCCATATCCGAAGATAAGGGATACTCTGTACAAGTGGACGGAGTTACT GTGAGACCAAAGATGATGGTGAAAGTTGATCCACAGCTTCTACAAGTGTTGCGAGGTGGAAACACTGATGAATTCAAACATGCCTGTGATTTCTTCCTTG CATTAGCAGCTTGTAATACAATTGTTCCTCTCATTGTTGACTCATCTGAACCGGTTGCTAAGTTGATGGATTACCAAGGGGAATCTCCTGATGAACAAGC GTTAGCTTATGCTGCTGCTGCATATGGTTTTATGCTTATTGAACGAACTTCAGGTCGTATAGTTATTGATGTTCTGGGTGAAAGGCAAAGGTTCAATGTT TTGGGCATGCATGAGTTTGACAGTGACAGGAAGAGGATGTCTGTGATTTTAGGCTTTCCAGACAACTCTGTCAAAATCTTTGTAAAGGGAGCTGATACAT CCATGCTAAATATTATCGATAAACCTTCAAGCATCGGCATACTATATGTGACTGAAGGCCATCTGCACTCTTACTCTTCGCTTGGACTTAGAACACTTGT CATCGGGATACGTGAACTGAGTGATTCAGAATTTGAGCGGTGGAACTCTTCCTTTGAGGCTGCCAGTACGGCTTTGATTGGCAGGGCCACTCTGCTTCGG AAAGTTGCCAGCAGTGTAGAAAACCAGCTTACCTTACTGGGTGCTTCTGCTATTGAAGATAAACTTCAACAGGGTGTTCCGGAAGCCATCGAGTCACTGA GGACTGCAGGAATTCAAGTGTGGGTTTTAACTGGGGATAAGCAAGGAACTGCCATATCAATTGGTTACTCCTCAAAGCTCCTAACTAACAAAATGACGCA GATTACCATCAATAGCAACTCTAAGGATTCATGTAGGAAAAGTCTATCTGATGCTTTGCTTGTATGCAAGAAGCTCAGCAATTTATTGTCGGCGACAAAT GATGAAGAAGAAGAAATTTATGCCTTTGCTGAAAGCTCAGCCGCTTTAATTATAGACGGGACTAGCCTAGTCTATATCCTTGACAGTGAACTTGAAGAAC AGCTGTTTGAATTGGCCAACAAATGCTCTGTAGTTCTTTGTTGTCGGGTGGCTCCGCTGCAGAAAGCTGGAATTGTAACCCTTGTGAAGAACAGGACCTC TGGCATGACTCTTTCCATCGGGGATGGTGCAAATGATGTTTCTATGATCCAAATGGCTGATGTGGGAGTTGGAATCTGTGGGCAGGAGGGTCGGCAAGCT GTAATGGCATCCGATTTTGCCATGGGACAATTCAGATTCTTAGTTCCACTTCTGCTGGTCCATGGGCATTGGAATTACCAGCGCATGAGTTACATGATAA TTTACAACTTCTACAGGAATGCAGTGTTTGTTCTCTTATTGTTCTGGTATGTGCTCTTCACTGCCTTCACATTGACAACTGCCATCAACGAGTGGAACAG CGTGTTGTATTCAGTGCTCTACACGGCACTTCCAACAGTCGTTGTCGGAGTTCTCGACAAGGACTTAAGTCGGAAAACCCTCCTCAAGTACCCTCAGCTT TACGGAGCAGGTCAACGGCAAGAAAACTACAATTCGAAGCTGTTCTGGCTGACGATGATGGACACCGTGTGGCAAAGCGTGGTGGTTTACTTCATCCCTT GCTTTGCTTACTGGAGTAGCACCATCGACGGAGCGAGTATAGGGGATCTCTGGACTCTAGCAGTCGTGATCTTGGTCAATCTACATCTAGCAATGGACAT CACACGGTGGAATTGGATCATGCATGGAGTAATATGGGGATCCATTACTGCTACGTTCGTCTCGATAATCGTCATTGATTCTGTACCTAGTTTGCCTGGT TACTGGGCTTTTTTCCACATCGCCAACACTGCGTTGTTCTGGTTATGCTTGGTTGGTATAGTTGTAGCAGCACTAATTCCACGATTTGTTGTGAAAATTC TGTATCAATACTTCAAACCTTGTGACATACAAATTGCCAAGGAGGCTGATAAATTTAAACCTCTTTAA
AA sequence Show only first row Show all	>Lus10028873 pacid=23177325 polypeptide=Lus10028873 locus=Lus10028873.g ID=Lus10028873.BGIv1.0 annot-version=v1.0 MDSPPSPIPSESLLNDDAFSRRNASSRAGSTMEVVFSDMELKPVMYGSKKADPEVYTMSQREINEEDARFVYINDPGRTNEKCEFARNSISTAKYSVFSF LPRNLFEQFHRVAYIYFLIIAVLNQLPQLAVFGRGAPLVPLAFVLLVTAIKDAYEDWRRHKADKIENNRFASVLLNGHFQQKKWKHIQAGEIIKVVANGT LPCDMVLLSTSEPTGVAYVQTINLDGESNLKTRYAKQETISWNPESGEMLTGLIKCEKPNRNIYGFQGNMEIDGKRLSLGPSNILLRGCDLKNTAWVLGV VVYCGPETKAMLNSSGSPSKRSRLEIRMNFEIIMLSFFLFILCTAVSVCAAVWLRRHKDELDTMPFYRRKDFNEADPRNYNYYGWGVEILFTFLMAVIVF QVMIPISLYISMELVRVGQAYFMTRDTEMYDETSDSRFQCRALNINEDLGQIKYVFSDKTGTLTENRMEFMCASIGGVDYSGAMAISEDKGYSVQVDGVT VRPKMMVKVDPQLLQVLRGGNTDEFKHACDFFLALAACNTIVPLIVDSSEPVAKLMDYQGESPDEQALAYAAAAYGFMLIERTSGRIVIDVLGERQRFNV LGMHEFDSDRKRMSVILGFPDNSVKIFVKGADTSMLNIIDKPSSIGILYVTEGHLHSYSSLGLRTLVIGIRELSDSEFERWNSSFEAASTALIGRATLLR KVASSVENQLTLLGASAIEDKLQQGVPEAIESLRTAGIQVWVLTGDKQGTAISIGYSSKLLTNKMTQITINSNSKDSCRKSLSDALLVCKKLSNLLSATN DEEEEIYAFAESSAALIIDGTSLVYILDSELEEQLFELANKCSVVLCCRVAPLQKAGIVTLVKNRTSGMTLSIGDGANDVSMIQMADVGVGICGQEGRQA VMASDFAMGQFRFLVPLLLVHGHWNYQRMSYMIIYNFYRNAVFVLLLFWYVLFTAFTLTTAINEWNSVLYSVLYTALPTVVVGVLDKDLSRKTLLKYPQL YGAGQRQENYNSKLFWLTMMDTVWQSVVVYFIPCFAYWSSTIDGASIGDLWTLAVVILVNLHLAMDITRWNWIMHGVIWGSITATFVSIIVIDSVPSLPG YWAFFHIANTALFWLCLVGIVVAALIPRFVVKILYQYFKPCDIQIAKEADKFKPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028873 [exp]	0	1
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	2.2	0.7924
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	9.1	0.7646
AT3G51580			unknown protein		Lus10025140 [exp]	13.7	0.7594
AT5G39785			Protein of unknown function (D...		Lus10015368 [exp]	24.0	0.7479
AT3G24715			Protein kinase superfamily pro...		Lus10038160 [exp]	24.1	0.7311
AT1G34270			Exostosin family protein (.1)		Lus10031610 [exp]	27.7	0.7390
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	27.9	0.7642
AT3G51580			unknown protein		Lus10025224 [exp]	42.3	0.7032
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10029864 [exp]	44.3	0.6812
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	44.7	0.7230

Compare expression of checked genes

Lus10028873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.