Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04930 1646 / 0 ALA1 aminophospholipid ATPase 1 (.1) AT3G13900 690 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 690 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT3G27870 686 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 684 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 681 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G68710 679 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 672 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 671 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 669 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008945 [exp] 2352 / 0 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1) Lus10033406 [exp] 1937 / 0 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10034872 [exp] 1937 / 0 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028873 [exp] 1901 / 0 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008947 [exp] 1885 / 0 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008473 [exp] 685 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 682 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 674 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 671 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246200 [exp] 1804 / 0 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014600 [exp] 1793 / 0 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 1723 / 0 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.006G109200 [exp] 1302 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.016G138000 [exp] 1269 / 0 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.001G197500 [exp] 672 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G191400 [exp] 671 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.003G043300 [exp] 671 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 665 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.012G058000 [exp] 647 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10028875 pacid=23177292 polypeptide=Lus10028875 locus=Lus10028875.g ID=Lus10028875.BGIv1.0 annot-version=v1.0 ATGGATCCAGCTTCTCCAATCCAGAACGACGAAATCACTCTGATTTCGGACTCCAGGAGAACTCCTTCTCCCCAGCATTCACGAGCGTGTTCAGCAGCAG CAGCTAGGGAGGTCGGTTTCAATGATTTGGCGCCTAAACATGTGATGAATGGATCCAACAAGAGGGCTGAACAGGAGGTGTATAGTATGTCTCAGAAAGA GATCAGCGAAGAAGACGCTAGGTTTGTATACATAAATGACCCTGGAAGGACTAACAATAAATTTGAGTTTGCTGGCAACTCTGTTAGGACTTCCAAGTTC TCAGCTATTTCATTCTTGCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCATACATTTATTTCCTTATAATAGCTGTCCTCAATCAGCTGCCCCAGC TTGCTGTTTTTGGCCGTGGAGCTTCCATTTTGCCACTTGCTTTTGTGCTGCTAGTGACAACAATAAAGGATGCTTATGAGGATTGGAGGAGGCATAGAGC TGATAAGATTGAGAACAATAGATTGGCATGGGTTTTGGTGGATGGTCAGTTCCAACAGAAGAAATGGAAGGATATTCAGGTTGGTGAAATAATAAAGGTC GAATCGAATGGTACTCTTCCTAGTGATATGGTCTTGCTCTCCACCAGTGATTCTACTGGGGTTGCTTATGTGCAGACTATAAACTTGGATGGAGAGTCGA ATTTGAAAACTCGGTATACAAAGCAGGAGACCCTTCCTAAGAATCCGGAGGATGGAACTTATACCGGTTTGATCAAGTGTGAGAAACCTAATAGGAACAT TTATGGATTCCATGGGAACATGGAGATCGATGGGAAGCGCCTGTCCCTTGGACCTTCCAACATTATTCTTCGAGGGTGCGACCTGAAGAATACGGCTTGG GTTCTCGGGGTTGCAGTGTATTGTGGCCCTGAGACGAAAGCTATGTTGAATAGCTCAGGATCCCCTTCAAAGAGAAGTCGGCTCGAGACAAGCATGAACT TCGAAATCATCATACTGTCTTTGTTTCTTGTTGTCTTGTGTACAGTCGTATCTGTATGTGCTGCAATATGGCTGAGGCGAGACAGGGATGAGTTGGATAC TGTGCCTTTTTATAGGCGTAAGGATTACAGTAAAGGTGTGGTAGTTAACTTCAATTATTATGGATGGGGAATGGAGATAGTCTTCACATTCCTGATGGCA GCAATTGTGTTCCAGATCATGATTCCTATTTCTTTGTACATTTCTATGGAGCTTGTTCGGGTTGGTCAGGCATATTTCATGATTCGAGATTCACAGATGT ATGATGAGGCGTCGAATTCAAGGTTCCAATGTCGTGCTTTGAATATAAACGAAGATTTGGGGCAGATAAAGTACGTGTTCTCGGACAAAACAGGGACACT TACAGAAAATAAGATGGAATTTCAGTGTGCAAGCATATGGGGAGTGGATTACAGTGGTGCTATAGCTATCTCAGCAGATGACGGATACTATGTGCAATTG GATGGTTTTACTGTGAGGCCAAAGATGAGGGTTAAGGTTGATCCTCATCTTCTGAAAGTATTAAGAGGTGGAAATACGGAAAAGGAATCTAAACATATAC GTGATTTCTTCCTAGCATTAGCAGCTTGTAATACAATTGTGCCGCTCATCGTTGACACATCTGATCCTGTTGCTAAGTTGATGGATTACCAAGGCGAATC TCCTGATGAACAAGCACTAGCTTATGCTGCTGCTGCTTATGGATTTATGCTTATTGAACGAACTTCAGGCCACATAGTTATTGATGTTTTGGGTGAAAGG CAAAGGTTCAGTGTTTTGGGTTTGCATGAGTTTGACAGTGATAGGAAGAGGATGTCTGTCATTTTAGGCTTCCCTGACAAATCTGTCAAAATCTTTGTAA AGGGAGCCGATACATCCATGTTCACGGTCATCGATAAAACTTCAAGCATGGACGTAGTACGTGCAACTGAAGGCCATCTTCATTCTTACTCCTCCCTAGG CCTGAGAACGCTTGTTATCGGAATGCATGAATTGAGTGATCTGGAGTTTGAGCAGTGGCACTCCTCTTTCGAGGCTGCCAGTACAGCATTAATTGGCAGG GCCGCTTTGCTTCGGAAGGTTGCTAGCAATGTTGAGAACCAACTTAAATTACTGGGTGCTTCTGCTATTGAAGATAAACTTCAACAAGGTGTTCCAGAAG CCATACAATCTCTGAGGACTGCAGGAATTCAAGTTTGGGTGTTAACTGGAGATAAACAAGAAACGGCAATATCAATTGGTTATTCTTCAAAGCTCCTAAC CAACAAGATGACACATATCACTATCAACAAGAACTCTAAGGAGTCATGTAGAAGGAGTTTATTGGATGCTTTGCTTATATGTAAGAAGCTCAGCAATGTC TCTGACACACTTGAGAACGAAGAAATTTCTTCATCTACTGGAAACTCAGTTGCTTTAATTATAGATGGGACAAGCCTTGTTTATATACTTGATAGTGAAC TAGAAGAACAGCTTTTTGAATTGGCCAGTAAATGCTCTGTCGTTCTATGTTGCCGGGTTGCTCCTCTGCAAAAAGCTGGTATTGTTGCCCTTGTGAAGAA TAGAACAGCTGACATGACACTTTCCATTGGAGATGGTGCAAATGATGTTTCAATGATCCAAATGGCTGATGTTGGAGTCGGAATCAGTGGGCAAGAGGGT CGGCAAGCTGTAATGGCATCCGACTTTTCCATGGGGCAGTTCAGATTCTTGGTTCCTCTCTTGCTTGTCCATGGACATTGGAATTACCAGCGAATGAGTT ACATGATAATTTACAACTTCTACAGGAACGCAGTGTTTGTTCTCGTCTTGTTTTGGTATGTGCTCTTCACTGCTTTCACTTTGACGACTGCCATTAATGA GTGGAACAGTGTGCTGTATTCAGTAATATACACAGCAGTGCCGACTGTTGTTGTTGGCGTACTGGACAAGGATTTAAGTCGGAAAACCTTACTCAAGTAT CCTCAGCTTTACGGAGCAGGTCAACGGCGAGAAAGTTACAATTCAAAATTGTTCTGGCTGACAATGATGGACACTCTGTGGCAAAGCGTGGTTGTTTTCT TCGTCCCGTTCTTTGCTTATTGGAACAGCACCATCGACACAGCGAGCATAGGGGACCTCTGGACGCTAGCGGTAGTTATTTTGGTCAATCTGCATCTAGC AATGGACGTGACCCGGTGGAATTGGCTTATGCATGCAAGCATATGGGGATCCATCGTCGCAACTTTCATCTCTATAGTCGTCATTGATTCCATACCGAAC TTAGCTGGTTACTGGGCGTTTTTCCATGTCGCGGAGACGGGGCTGTTCTGGTTTTGCTTGCTTGGGATAGTTGTAACGGCACTGATCCCGCGACTGGTAG TGAAAACTCTGCATCAATACTGCAACCCAGGTGACATCCAAATTGCAAAAGAGGCTGAGAAATTCAAAACATTAAGGGATGTTGTTGGATGTGTAGAAGT GGAAATGGGTCCGAGATGA
AA sequence Show only first row Show all	>Lus10028875 pacid=23177292 polypeptide=Lus10028875 locus=Lus10028875.g ID=Lus10028875.BGIv1.0 annot-version=v1.0 MDPASPIQNDEITLISDSRRTPSPQHSRACSAAAAREVGFNDLAPKHVMNGSNKRAEQEVYSMSQKEISEEDARFVYINDPGRTNNKFEFAGNSVRTSKF SAISFLPRNLFEQFHRVAYIYFLIIAVLNQLPQLAVFGRGASILPLAFVLLVTTIKDAYEDWRRHRADKIENNRLAWVLVDGQFQQKKWKDIQVGEIIKV ESNGTLPSDMVLLSTSDSTGVAYVQTINLDGESNLKTRYTKQETLPKNPEDGTYTGLIKCEKPNRNIYGFHGNMEIDGKRLSLGPSNIILRGCDLKNTAW VLGVAVYCGPETKAMLNSSGSPSKRSRLETSMNFEIIILSLFLVVLCTVVSVCAAIWLRRDRDELDTVPFYRRKDYSKGVVVNFNYYGWGMEIVFTFLMA AIVFQIMIPISLYISMELVRVGQAYFMIRDSQMYDEASNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSGAIAISADDGYYVQL DGFTVRPKMRVKVDPHLLKVLRGGNTEKESKHIRDFFLALAACNTIVPLIVDTSDPVAKLMDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDVLGER QRFSVLGLHEFDSDRKRMSVILGFPDKSVKIFVKGADTSMFTVIDKTSSMDVVRATEGHLHSYSSLGLRTLVIGMHELSDLEFEQWHSSFEAASTALIGR AALLRKVASNVENQLKLLGASAIEDKLQQGVPEAIQSLRTAGIQVWVLTGDKQETAISIGYSSKLLTNKMTHITINKNSKESCRRSLLDALLICKKLSNV SDTLENEEISSSTGNSVALIIDGTSLVYILDSELEEQLFELASKCSVVLCCRVAPLQKAGIVALVKNRTADMTLSIGDGANDVSMIQMADVGVGISGQEG RQAVMASDFSMGQFRFLVPLLLVHGHWNYQRMSYMIIYNFYRNAVFVLVLFWYVLFTAFTLTTAINEWNSVLYSVIYTAVPTVVVGVLDKDLSRKTLLKY PQLYGAGQRRESYNSKLFWLTMMDTLWQSVVVFFVPFFAYWNSTIDTASIGDLWTLAVVILVNLHLAMDVTRWNWLMHASIWGSIVATFISIVVIDSIPN LAGYWAFFHVAETGLFWFCLLGIVVTALIPRLVVKTLHQYCNPGDIQIAKEAEKFKTLRDVVGCVEVEMGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	0	1
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	1.7	0.9073
AT3G01720			unknown protein		Lus10022320 [exp]	2.2	0.8725
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	2.4	0.8836
AT3G50120			Plant protein of unknown funct...		Lus10011501 [exp]	2.8	0.8860
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10021329 [exp]	4.0	0.8795
AT2G20050			protein serine/threonine phosp...		Lus10012976 [exp]	6.0	0.8581
AT4G28600		NPGR2	no pollen germination related ...		Lus10022897 [exp]	8.8	0.8282
AT1G04910			O-fucosyltransferase family pr...		Lus10017105 [exp]	9.6	0.8486
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	12.0	0.8698
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	12.4	0.8605

Compare expression of checked genes

Lus10028875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.