Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04920 536 / 0 EAP30/Vps36 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008942 [exp] 749 / 0 AT5G04920 598 / 0.0 EAP30/Vps36 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246400 [exp] 580 / 0 AT5G04920 553 / 0.0 EAP30/Vps36 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF11605 [flax] [poplar] Vps36_ESCRT-II Vacuolar protein sorting protein 36 Vps36 CL0123 [flax] [poplar] HTH PF04157 [flax] [poplar] EAP30 EAP30/Vps36 family
Representative CDS sequence Show only first row Show all	>Lus10028877 pacid=23177316 polypeptide=Lus10028877 locus=Lus10028877.g ID=Lus10028877.BGIv1.0 annot-version=v1.0 ATGGCAGCGCCACCGCACAACTTCTTCCTGCCGGCATCCGTAACAACAAGCGGCCGTCCAGTCCTCCAGCCAGACGAGGTCGAGTGCCAACTTCTCTCAG CCGTAGACCTCGAATCGGAAGACAACGCTGAGAGTAGCAGCAGCAGCAGCAGCTCCGATTTTGCTCCGCTGAAATCAGGCCTTCTCATCCTAACAACCCA CCGCCTCCTCTGGCTGCCTTCCAATCCCACCATCGCACCTGCGATCGCCATCCCTCTCGGATCAGTCACCCACATTTTCTCGGCCAAGAAATCAATCAAG GCAATGTTCCATTCTCCGAGGTTCCGGTTCCAGGTGTCGATGAACTCCAGGAGTGCGGTTGTTACAGTGGTGGTCAGGGGCAAAGGAAATGATTGGGAGG TGTTTTTCGCTAAACTGTGGGAGAGTTGGAGGGCCAGAGCTTGGGAGAGCTCTGTTGTTGCCTCTAAGGAAACTAGTGTTTCTGGACCGAGTTCTACTTC TGGCGGCGGCCTTTATTCCAGTGATGGGTCTGTGAGGATGGTTGGGGTATCTGGGATTTTGAGGAAGGAGCAAGAGATGTGGGAAAATACCGATAAGAGC TTGCAGGATGCTTTCCAGGACTTGAATGCTCTCATGGGCAAGGCTAAGGAGATGATGACACTGGCAGAGAAAATGAGGCAAAAGCTTTTATCTGCCTCCA ATTCTCAAAGCAATTCAGCCAATGATGATGAAATGGGTTCCAAGGAGATGCAAGATTGGTTGTTAAGCGTTGGTATCATATCCCCTGTTACAAAAGAATC TGCAGGTGCCTTGTATCATCAGCAGTTGTCTCGTCAGTTGGCAGATTTTGTGAGAATTCCCCTTGAAAGAGCAGGAGGAATGGTCAACATGATAGACATC TACTGTCTTTTCAATCGTGCTCGTGGCACAGAGTTGATTTCTCCTGAAGATTTGTTGCAAGCATGCTCTCTTTGGCAGAAGTTTGATGTACCAGTCATGC TTCGGAAATTCGACAGTGGTGTGATGGTCATCCAGAACAAGTCCCACAGCGATGAAGAGGTATTTGCTCGAATCAAAACTCTTGTGACAAAGCCAGATGC TCTTAGGTCTGGAATAACAGCTAGTGATGCTGCAATGACTTTGGGTATCGCTCCAGCGATGGCCAAAGAGCATCTCCTCTCTGCTGAGAGCAAAGGTTTA CTCTGCAGGGATATCAGCCCTGATGGCTTTCACTTTTACGTCAACATCTTCCCTGAGACTGATCCCAACAATATATACCTAGTGAAAGAGCATAGTATAT ACTCCTCCTGGATCAAAGCTACAGCTGCTTCAGCTTCATAG
AA sequence Show only first row Show all	>Lus10028877 pacid=23177316 polypeptide=Lus10028877 locus=Lus10028877.g ID=Lus10028877.BGIv1.0 annot-version=v1.0 MAAPPHNFFLPASVTTSGRPVLQPDEVECQLLSAVDLESEDNAESSSSSSSSDFAPLKSGLLILTTHRLLWLPSNPTIAPAIAIPLGSVTHIFSAKKSIK AMFHSPRFRFQVSMNSRSAVVTVVVRGKGNDWEVFFAKLWESWRARAWESSVVASKETSVSGPSSTSGGGLYSSDGSVRMVGVSGILRKEQEMWENTDKS LQDAFQDLNALMGKAKEMMTLAEKMRQKLLSASNSQSNSANDDEMGSKEMQDWLLSVGIISPVTKESAGALYHQQLSRQLADFVRIPLERAGGMVNMIDI YCLFNRARGTELISPEDLLQACSLWQKFDVPVMLRKFDSGVMVIQNKSHSDEEVFARIKTLVTKPDALRSGITASDAAMTLGIAPAMAKEHLLSAESKGL LCRDISPDGFHFYVNIFPETDPNNIYLVKEHSIYSSWIKATAASAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04920			EAP30/Vps36 family protein (.1...		Lus10028877 [exp]	0	1
AT3G06620			PAS domain-containing protein ...		Lus10040540 [exp]	1.4	0.8405
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	2.2	0.8802
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035867 [exp]	4.0	0.7719
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	6.9	0.8326
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	9.5	0.7851
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	11.7	0.8050
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	12.5	0.8238
AT4G26410			Uncharacterised conserved prot...		Lus10007935 [exp]	13.6	0.7425
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	15.2	0.8111
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	15.3	0.8232

Compare expression of checked genes

Lus10028877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.