Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04910 126 / 5e-37 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008941 [exp] 168 / 2e-53 AT5G04910 248 / 7e-84 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G012100 [exp] 137 / 3e-41 AT5G04910 245 / 8e-83 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028878 pacid=23177173 polypeptide=Lus10028878 locus=Lus10028878.g ID=Lus10028878.BGIv1.0 annot-version=v1.0 ATGCCATGGACAAAAGTGAAGGAGCACAACGGGAGAGTAGATAGGCGGAGGTTTTTCAAAGGGTTTTTGGATGCAGACACTGAGGAGGAGCGAAGGAGGT TGATTTTGGGTTTACGCGCCCGTCTTGTCCTGGAAATTGAGGCACTATTTCTGGACCCTGATTACAGCCGATCTGATCTAGCACAATTGCTCAGAGCTGT TCAAACACAGGAAAAGCTGAAATTACAGCTGACTGCAACGATCCACCTATTGAAGAAAGCTGGTCGGCCGTCTGAGCGCCTGGTGAGCCATGCAAATTGC AGGTTTAACAAGCCTATGGAACACCAGTGCGTCCACTTGCACGAAATAACAGAGGAAGAAGGGACCGAAGAAGCAGAAGCGAATGCAGAATACGACCATG CCCTCAATGAAGCCATTAGAGGAGTGCAAGATGCAGTTCACTAA
AA sequence Show only first row Show all	>Lus10028878 pacid=23177173 polypeptide=Lus10028878 locus=Lus10028878.g ID=Lus10028878.BGIv1.0 annot-version=v1.0 MPWTKVKEHNGRVDRRRFFKGFLDADTEEERRRLILGLRARLVLEIEALFLDPDYSRSDLAQLLRAVQTQEKLKLQLTATIHLLKKAGRPSERLVSHANC RFNKPMEHQCVHLHEITEEEGTEEAEANAEYDHALNEAIRGVQDAVH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04910			unknown protein		Lus10028878 [exp]	0	1
AT5G26749			C2H2 and C2HC zinc fingers sup...		Lus10031439 [exp]	1.4	0.9296
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	2.4	0.9365
AT2G39210			Major facilitator superfamily ...		Lus10021513 [exp]	5.4	0.8568
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	10.5	0.8641
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	13.0	0.8705
AT1G10800			unknown protein		Lus10037441 [exp]	15.3	0.9020
					Lus10039025 [exp]	15.5	0.8890
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	15.6	0.8796
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10037262 [exp]	16.2	0.8785
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	16.3	0.8968

Compare expression of checked genes

Lus10028878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.