Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10690 1313 / 0 GYRA DNA GYRASE A (.1) AT3G23890 61 / 3e-09 ATTOPII, TOPII topoisomerase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008940 [exp] 1328 / 0 AT3G10690 1053 / 0.0 DNA GYRASE A (.1) Lus10019720 [exp] 61 / 8e-09 AT3G23890 1685 / 0.0 topoisomerase II (.1.2) Lus10016397 [exp] 60 / 1e-08 AT3G23890 1682 / 0.0 topoisomerase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247000 [exp] 1386 / 0 AT3G10690 1366 / 0.0 DNA GYRASE A (.1) Potri.009G058900 [exp] 62 / 3e-09 AT3G23890 1691 / 0.0 topoisomerase II (.1.2) Potri.001G264000 [exp] 51 / 5e-06 AT3G23890 1716 / 0.0 topoisomerase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03989 [flax] [poplar] DNA_gyraseA_C DNA gyrase C-terminal domain, beta-propeller PF00521 [flax] [poplar] DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A
Representative CDS sequence Show only first row Show all	>Lus10028879 pacid=23177257 polypeptide=Lus10028879 locus=Lus10028879.g ID=Lus10028879.BGIv1.0 annot-version=v1.0 ATGGCTCTTTCCTCCACTTTCCGCTTATCTTCTACTCTCCTGCATCACCACCTCCCTCTCCCATCCACGAGCTTCGCCTTCCTCCGCCGCACCTTCACCC TCCATTCCCGTTCACTCTCTAAAATCCCCCGCCGCGTCGGCAACCACCCACGGCCTATTCAAGCCCGTCTCGGAGACGATACCGAGGGCCAGAATGGGAG TCTTCTGGTGAATGGTTCGGATGGTGGTGCTACTAGAGATGGTCGCGTGATTCCTATTGAGCTTCACAAAGAGGCTACTGAGGCTTACATGTCCTACGCC ATGTCAGTTTTGCTGGGTAGGGCTTTGCCCGACGTTAGGGATGGGCTGAAGCCTGTTCACCGGAGGATACTGTTTGCCATGCATGAACTGGGGCTCTCGT CAAGGAAGCCGTTTAAGAAGAGTGCTAGAGTTGTTGGAGAGGTACTTGGTAAGTTTCATCCGCATGGAGATACTGCTGTATATGATGCATTGGTCAGGAT GGCTCAGGATTTCTCATTGAGGTGCCCTCTTGTCCAAGGCCACGGAAATTTTGGTTCCATTGATGCAGATCCAGCTGCTGCTATGCGTTATACAGAATGC AGGCTGCAAGCACTGACAGAAGCAGTTTTGCTGGCTGACCTGGAACAAGATACGGTTAATTTTGTCCCCAATTTTGATAATTCTCAAAAGGAACCTTCAC TTTTGCCTGCCCGGCTTCCAACACTGTTATTGAATGGTTCTTCTGGAATAGCGGTGGGCATGGCAACAAATATTCCTCCCCATAACCTTGGAGAGATAGT GGATGTCCTCTGTGCATTAATTCACAACCCAGAAGCTACTTTGCAAGAATTGTTGGAATATATGCCGGGGCCCGATTTCCCTACTGGAGGCCTAATCATG GGAAATCTAGGGATTTTGGAGGCCTATCGAACCGGACGCGGGCGAATCATAGTCAGGGGTAAGACAGAGGTGGAATTACTTGACTCGAAAACGAAGAGGT CTGCGATAATTATAAAGGAGATTCCATACCAGACGAACAAAGCATCACTTGTGGAAAAGATCGCTGAACTTGTAGAGAGCAAGAGTATCGATGGGATCTC TGATATCCGTGATGAAAGTGATCGTACTGGGATGCGTGTTGTAATCGAGCTGAAACGTGGAGCAGAGCCAGCACTTGTTTTGAATAACCTTTATCGTCTA ACTCCACTTCAATCTAGTTTTAGCTGCAACATGGTCAGTATTCTAGATGGACAGCCGAAACAAATGGGACTGAAAGAAATGCTTAAGACATTTTTGGACT TCCGGTGTTCTGTTGTTGAGCGACGAGCTCGATTCAAGCTTTCACAAGCTCAGGATAGAAGACATATTGTTGAGGGGATTGTGGTGGGGCTTGATAATTT GGATCACATCATTCAAGTCATTAAGGAATCTTCCAACAATCCAGCTGCAATTTCTGGTCTAATGAAAGAATTCAACATTTCTCAGAAACAAGCTGAAGCT ATATTAGATATAAGCCTCCGAAGGCTCAACCATTTGGAGAGAAGTAAATATGTTGATGAAAGAAAATCTTTAATTGCACAAATCTCAAAACTAGAGGAAC TACTATCCAGCAAGGAAAAGATGCTACATTTGATAGAGCAAGAAGCAGTTGAGCTCAAAAATACATTTTCAAATCCAAGGCGCTCAATGTTGGAATATTT TGACGATGGTCAGCTTGATGATATAGATGCTATTCCTAATGAGGAAATTCTGATGGCTATTAGTGAAAAGGGTTATGTCAAGCGGATGAAGCCCAACACC TTCAATCTTCAGAAACGTGGAACCGTTGGTAAATCTGTTGGCAAATTGAGAGTAAATGATGCAATGTCAGATTTTGTGGTCTGTCGATCACATGATTACA TTCTTTATTTTAGCGACCGAGGTATTGTCTACTCAGAACGTGCTTACAAAATACCAGAATGCACTAGGAGTGCTGCTGGCACTCCACTGGTTCAGATATT GTCGTTATCTGATGGCGAGAGGATAACCTCCATTATTCCTGTGAGTGAGTTCGCTGAGGATCAGTATCTGCTGATGCTCACAGTCAATGGTTACATCAAG AAAGTATCTCTGAGTGTTTTCTCTGCAATACGCTCAACTGGAATCATAGCGATTCAATTGGTTCCGGGTGATGAGTTGAAATGGGTTCGTTGTTGCACAA ATGACGATCTTGTAGCAATGGCTTCGCAGAACGGATATGTCATCCTAAGTTCCTGCGACAACATCCGAGCACTTAGCAGAAATACCAGGGGTGGTGTGGC CATGAGATTAAAAGATGGCGACAAGATGGCCAGCGTGGACATTATACCCGCTGCCATGAGGAAAGACTTGGAAAAGGCAATGGAAGATCCCGAGACCATC AGCAAGGGCAGTGGACCTTGGTTGTTGTTTATCTCCGAGAGTGGCCATGGCAAGAGGGTTCCTCTAAGCAGCTTCAAAATCCTACCTCTAAATAGAGTTG GTTTAATTGGATCAAAGTTTTCGGAGGAAGAAGGGTGTTTGGCAGCAGTCTTTGTGGTTGGTTTCTCGTCAGCAGAGGACGGCGAAAGCGATGAACAAGT AGTTCTAGTAAGTCAAAGCGGCACTGTGAACAGAATCAAAGTTCGTGAAATATCCATACAGTCACGTTATGCAAGGGGAGTGATTTTGATGCGTCTGGAC TATGCTGGAAAGATTCAATCAGCATCTTTGATATCAGCAACGGAGGATGAGGACGAAACAGATGACGACTCTACAGCAATAGCAGCAGACGAAGCAGAAT CACCAGCTTCCATGGCTTCTTAA
AA sequence Show only first row Show all	>Lus10028879 pacid=23177257 polypeptide=Lus10028879 locus=Lus10028879.g ID=Lus10028879.BGIv1.0 annot-version=v1.0 MALSSTFRLSSTLLHHHLPLPSTSFAFLRRTFTLHSRSLSKIPRRVGNHPRPIQARLGDDTEGQNGSLLVNGSDGGATRDGRVIPIELHKEATEAYMSYA MSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKSARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLVQGHGNFGSIDADPAAAMRYTEC RLQALTEAVLLADLEQDTVNFVPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNLGEIVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIM GNLGILEAYRTGRGRIIVRGKTEVELLDSKTKRSAIIIKEIPYQTNKASLVEKIAELVESKSIDGISDIRDESDRTGMRVVIELKRGAEPALVLNNLYRL TPLQSSFSCNMVSILDGQPKQMGLKEMLKTFLDFRCSVVERRARFKLSQAQDRRHIVEGIVVGLDNLDHIIQVIKESSNNPAAISGLMKEFNISQKQAEA ILDISLRRLNHLERSKYVDERKSLIAQISKLEELLSSKEKMLHLIEQEAVELKNTFSNPRRSMLEYFDDGQLDDIDAIPNEEILMAISEKGYVKRMKPNT FNLQKRGTVGKSVGKLRVNDAMSDFVVCRSHDYILYFSDRGIVYSERAYKIPECTRSAAGTPLVQILSLSDGERITSIIPVSEFAEDQYLLMLTVNGYIK KVSLSVFSAIRSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGYVILSSCDNIRALSRNTRGGVAMRLKDGDKMASVDIIPAAMRKDLEKAMEDPETI SKGSGPWLLFISESGHGKRVPLSSFKILPLNRVGLIGSKFSEEEGCLAAVFVVGFSSAEDGESDEQVVLVSQSGTVNRIKVREISIQSRYARGVILMRLD YAGKIQSASLISATEDEDETDDDSTAIAADEAESPASMAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	0	1
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	1.4	0.9432
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10001618 [exp]	2.8	0.9138
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10012114 [exp]	5.2	0.9145
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	5.3	0.9029
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	6.0	0.8793
AT2G44640			unknown protein		Lus10019499 [exp]	6.0	0.9048
AT2G44640			unknown protein		Lus10043347 [exp]	6.3	0.9119
AT4G19010			AMP-dependent synthetase and l...		Lus10016630 [exp]	6.9	0.8768
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	7.1	0.8896
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10033915 [exp]	7.2	0.9284

Compare expression of checked genes

Lus10028879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.