Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 413 / 3e-140 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45570 410 / 3e-139 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT1G33720 404 / 8e-137 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT3G61040 387 / 2e-130 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 387 / 5e-130 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT2G45560 382 / 3e-128 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33730 323 / 7e-107 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT5G44620 314 / 2e-101 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT5G07990 313 / 4e-101 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G12300 306 / 2e-98 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008938 [exp] 755 / 0 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 632 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 614 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 613 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10036079 [exp] 613 / 0 AT2G45550 481 / 5e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 612 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028857 [exp] 610 / 0 AT2G45550 459 / 2e-158 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 608 / 0 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 607 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 531 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 500 / 2e-174 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 430 / 6e-147 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 418 / 3e-142 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 415 / 5e-141 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 410 / 2e-139 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 410 / 3e-139 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.012G137200 [exp] 332 / 2e-108 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.007G084200 [exp] 329 / 9e-108 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 331 / 2e-107 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028881 pacid=23177266 polypeptide=Lus10028881 locus=Lus10028881.g ID=Lus10028881.BGIv1.0 annot-version=v1.0 ATGGAGTTCTTATTCATAATCACCTGCTTACTCTGCATCTTCACCACCTTCGCCAACCTCCTCCGTTTCAAATCCAAAAAAGCTCTGATCAAACTCCCGC CGGGACCTCTCCGACTTCCAATCATAGGCAACCTCCACAATCTATGCGACCAACCCCACAAATCATTAGCCCATCTCGCCGAGATTCACGGCCCCTTAAT GAGCTTGAAACTCGGCCAGGTGACCACAATCGTCGCTTCTTCTCCCGCCGTAGCTAAGGAGATCCTCAAAAAGCACGACCAACTCCTCTCCGACCGTAAC CTCATCCTCTCCATCCAGGCCCACGATCACCACAAATTCGGCATGTCGGTGCTCCCCGTGGGGCCGACATGGAGGAACCTTAGGAAAGTATGCAACACGT ATCTCTTCACTGCACGGAAGCTGGATTCGAACCAGGACATCCGCAGGAGCAAGGTTAAGGGGCTTCTCGAAAGTGTTCAAAGAAATGCCTATGAGGGGAA GGCCGTGGATATTGGCGAAGCCGTGTTCAGGACGAGTTTGAGTGCCTTGTCGTCGACTCTTCTTTCGTTGGATTTCGAAGGAGTCGCGGAATTTAAGGAG GCCGCGAGGGGAATAGTAGAAGACACCGGGAAGCCGAATTTGGGGGACTTCTTCCCCGCTCTGGCCGCGATGGATTTGCAAGGGATACAGAGGCGGTTGA GGTCTCATGTCGGCAAGTTGTTGGATTTGTTCGGAATGGTGATCGACGAACGATTGAAGGAGCGCCAGTCGGCGGAGAATTATGTAGCGAGTGATGACAT GTTGGATACACTGCTGGACGTTATGGAAAAGGATGGCGGCGAGGCCTCCATGGATCTAAATCTCATCAAACACTTGTTCTTGGATTTATTTGTTGCTGGG ACTGATACTACTTCAAGCACAGTAGAATGGGCAATGGCAGAGTTGCTCCGCAATCCCGACGTACTAACCAAAGCAAGGGAGGAAATGGACAAAGTAGTTG GGAAAGGAAATCATCTCCAGGAATCTGACATCCTTAAACTACCTTATCTGCAAGCAATACTCAAAGAAACATTCAGACTACACCCAGCAGCTCCGCTGTT ACTTCAGAGAAAGGCAAGATCAGATGTCGAGATGTGCGGTTTCACTATTCCTGAAGGAGCACAGATTCTAGTAAATGCATGGGCTATAGGGAGAGATCCA GCAACATGGAAAAACCCCAACTCGTACATGCCTGAGAGGTTCATGGGATCGGAAATTGATGTTCGCGGACACAGTTTCGAGCTGATCCCATTCGGGGGCG GAAGAAGAATTTGCCCCGGATTGCCATTGGCAATGAGGATGTTACCTATGATGCTGGGTTCGTTGGTTCATTCGTTTGATTGGAAGCTCAAGGATGGAGT TGCTGGTGAGAGTTTGGATATGGAAGAAAAGTTTGGGATCACTCTGCAGAAGGCCAAACCGTTGTTTGTTATTCCCATGTTTAGATAA
AA sequence Show only first row Show all	>Lus10028881 pacid=23177266 polypeptide=Lus10028881 locus=Lus10028881.g ID=Lus10028881.BGIv1.0 annot-version=v1.0 MEFLFIITCLLCIFTTFANLLRFKSKKALIKLPPGPLRLPIIGNLHNLCDQPHKSLAHLAEIHGPLMSLKLGQVTTIVASSPAVAKEILKKHDQLLSDRN LILSIQAHDHHKFGMSVLPVGPTWRNLRKVCNTYLFTARKLDSNQDIRRSKVKGLLESVQRNAYEGKAVDIGEAVFRTSLSALSSTLLSLDFEGVAEFKE AARGIVEDTGKPNLGDFFPALAAMDLQGIQRRLRSHVGKLLDLFGMVIDERLKERQSAENYVASDDMLDTLLDVMEKDGGEASMDLNLIKHLFLDLFVAG TDTTSSTVEWAMAELLRNPDVLTKAREEMDKVVGKGNHLQESDILKLPYLQAILKETFRLHPAAPLLLQRKARSDVEMCGFTIPEGAQILVNAWAIGRDP ATWKNPNSYMPERFMGSEIDVRGHSFELIPFGGGRRICPGLPLAMRMLPMMLGSLVHSFDWKLKDGVAGESLDMEEKFGITLQKAKPLFVIPMFR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028881 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	2.2	0.9448
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	3.5	0.9435
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	4.2	0.9145
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	4.9	0.9083
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022891 [exp]	5.7	0.8798
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010012 [exp]	7.9	0.8922
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	10.4	0.9077
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	11.6	0.9109
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	11.7	0.9133
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	12.8	0.9044

Compare expression of checked genes

Lus10028881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.