Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10720 664 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G04970 655 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 481 / 1e-164 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 471 / 2e-160 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 439 / 2e-148 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 387 / 1e-128 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 368 / 3e-121 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT3G60730 363 / 2e-119 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 363 / 6e-119 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 357 / 5e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008937 [exp] 962 / 0 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10015210 [exp] 416 / 2e-139 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 416 / 4e-139 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 420 / 6e-135 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010309 [exp] 402 / 2e-134 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 389 / 5e-129 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017375 [exp] 377 / 2e-125 AT3G43270 525 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 372 / 2e-122 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010170 [exp] 379 / 2e-120 AT3G43270 628 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G011100 [exp] 721 / 0 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.010G247700 [exp] 716 / 0 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.014G127000 [exp] 479 / 7e-164 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 472 / 1e-160 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 461 / 5e-157 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 389 / 7e-129 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134500 [exp] 380 / 7e-126 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) Potri.006G134600 [exp] 373 / 1e-122 AT2G26440 683 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 370 / 8e-122 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 367 / 9e-121 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10028882 pacid=23177136 polypeptide=Lus10028882 locus=Lus10028882.g ID=Lus10028882.BGIv1.0 annot-version=v1.0 ATGGCCTCCCATCTCCCATTCTCCTCCTCCATCTCCGCCACCGTCATTCTCTTCTCCCTATCTCTCCTCGCTTTAATCTCCTCGACATCCTCCGACACAC CATCCGCCGCCTGCAAATCCTCTCTATACCCGAAGCTCTGCCGCTCCCTCCTCTCCCCAACCTTCGGCGGCGGCTCCTCAAACGATTCATACTCGTTAGG CAAGTTCTCCGTCAAACAATGCACCAAGCAAGCCAGCCGTCTCTCCAAGCTCCTCCACAACCTCCTCTCCCACCGCGACAAGGACCGCTCCCGCCTCACC TTCCAGGAGATCGGAGCGCTCGAGGACTGCCTCGAGCTCTCCGACACCAATTTTGAGTTCCTCGAGTCGGTATCGTCCGAGCTCAAGGACGCCGAGGCCA TGAGCGACGAGCTGGTCGAGAAAGTCACTACTCTGCTCAGCGGCACGGTTACCAATCAGCAGACTTGTATTGACGGGCTGATTCAGGCTTCCGGATCGGG AACCGGGTCAGTTGTGATCGGATCGGGGTTCGGTTCGACCATGGGGAATTCGACCCAGTTGTACAGCGTGGCGCTTGGTTTGGTTACCCGGGCTTTGAAC CGGAAGTTGCGGAAGAGTAGGAAGAAGGGTGGTGGTGGGTTCCAGTTTAACGGCGGTGCCATTGGTCGTGGAGTTCGTGAGCCACTTCAGAATCTCATCA AGGAATTGCACAAAAGGTCTGGTTGCAAGAAATCCGGTAGCTGCTCGAGGTTAGAGCGCAGTTTGCAGGCCGAAAACAACATCTCCGGAGGAGGAAACAA CGGCATTCTGATCTACGATTACGTCATAGTCAGTCCTTCAGGCGACGAGAATTTCACTTCCATTACCGAAGCTGTAGCAATTGCACCCAACAATACCAAA CCGGAAGATGGCTATTTCGTTATCTACGCCAAAGAAGGCACCTACGAAGAGTACATCGTCATCACTAAGCACAAGAAGAACATTATGCTCATCGGCGACG GAATCAACCGCACCGTCATCACCGGCAACCACAGCGTCGTCGACGGCTGGACCACTTTCAATTCTTCGTCTTTCGCTGTTTCCGGGGAGAGATTCGCCGC CGTGGACGTCACCTTCCGAAACACCGCCGGGCCGGAGAAGCACCAAGCCGTGGCGCTGAGAAACAACGCCGACCTATCGACGTTCTACCGCTGCAGCTTT GAGGGTTACCAAGACACGCTCTACGCTCACTCCCTCCGACAATTCTACCGAGAATGCGACGTATACGGCACCGTCGATTTCATCTTCGGCAATGCCGCCG CCGTCTTCCAGAACTGCAACCTTTACGCCCGGAAGCCCCTGCCCAATCAGAAGAACGCGTTCACGGCCCAGGGCCGGACCGACCCATACCAGGTCACCGG AATATCGATCCAGAATTGCACGATCGAGGCGGCGCCGGATCTGAAGGCCAGCGTGGCGAATTCGACGATGAACTATTTGGGGCGGCCGTGGAAGCTGTAC TCTAGGACGGTAGTGATGGAGTCGTACGTTGGGGATCTGATCCAACCGGTTGGGTGGCTGGAGTGGAACGGATCGGTCGGGTTGGACACGCTGTATTACG GGGAGTTCAGGAATTATGGGCCGGGTTCGGATACGGGCCGGAGGGTGCAGTGGCCCGGGTATAGCCTGATGAATGTGACGGATGCGGTGAATTTCACGGT TTATAATTTGACGTTGGGTGACACGTGGCTGCCGTACGCTGACGTTCCGTTCAACGGAGGGTTGATGCAGTCTTGA
AA sequence Show only first row Show all	>Lus10028882 pacid=23177136 polypeptide=Lus10028882 locus=Lus10028882.g ID=Lus10028882.BGIv1.0 annot-version=v1.0 MASHLPFSSSISATVILFSLSLLALISSTSSDTPSAACKSSLYPKLCRSLLSPTFGGGSSNDSYSLGKFSVKQCTKQASRLSKLLHNLLSHRDKDRSRLT FQEIGALEDCLELSDTNFEFLESVSSELKDAEAMSDELVEKVTTLLSGTVTNQQTCIDGLIQASGSGTGSVVIGSGFGSTMGNSTQLYSVALGLVTRALN RKLRKSRKKGGGGFQFNGGAIGRGVREPLQNLIKELHKRSGCKKSGSCSRLERSLQAENNISGGGNNGILIYDYVIVSPSGDENFTSITEAVAIAPNNTK PEDGYFVIYAKEGTYEEYIVITKHKKNIMLIGDGINRTVITGNHSVVDGWTTFNSSSFAVSGERFAAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSF EGYQDTLYAHSLRQFYRECDVYGTVDFIFGNAAAVFQNCNLYARKPLPNQKNAFTAQGRTDPYQVTGISIQNCTIEAAPDLKASVANSTMNYLGRPWKLY SRTVVMESYVGDLIQPVGWLEWNGSVGLDTLYYGEFRNYGPGSDTGRRVQWPGYSLMNVTDAVNFTVYNLTLGDTWLPYADVPFNGGLMQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	0	1
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	1.0	0.9474
AT4G02870			unknown protein		Lus10027591 [exp]	3.6	0.8452
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	5.1	0.9127
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	5.5	0.8793
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030309 [exp]	6.3	0.8203
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	6.9	0.8958
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	8.1	0.8791
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	8.2	0.8864
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008936 [exp]	8.9	0.8572
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	9.5	0.8787

Compare expression of checked genes

Lus10028882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.