Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04980 520 / 0 DNAse I-like superfamily protein (.1.2) AT5G65090 442 / 1e-152 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G32010 332 / 7e-108 CVL1 CVP2 like 1 (.1.2) AT3G63240 330 / 2e-107 DNAse I-like superfamily protein (.1) AT1G05470 330 / 1e-106 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G37440 295 / 6e-96 DNAse I-like superfamily protein (.1.2) AT1G34120 263 / 2e-81 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT2G01900 256 / 1e-80 DNAse I-like superfamily protein (.1) AT4G18010 259 / 1e-79 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 251 / 4e-76 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033398 [exp] 736 / 0 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 706 / 0 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10008934 [exp] 510 / 0 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10024041 [exp] 389 / 2e-121 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10025305 [exp] 364 / 4e-121 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10006904 [exp] 362 / 1e-119 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10024427 [exp] 371 / 2e-117 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10041708 [exp] 347 / 2e-114 AT5G65090 469 / 2e-161 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 337 / 2e-112 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247800 [exp] 647 / 0 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 627 / 0 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 464 / 1e-159 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 452 / 3e-155 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.005G212700 [exp] 392 / 2e-131 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.002G050000 [exp] 387 / 2e-129 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 335 / 2e-109 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 332 / 7e-108 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.015G032200 [exp] 277 / 4e-88 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 269 / 6e-85 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10028884 pacid=23177263 polypeptide=Lus10028884 locus=Lus10028884.g ID=Lus10028884.BGIv1.0 annot-version=v1.0 ATGAACAACCAAGACAGCAACAATCAGTCGTTTCTCAAGAAGATTTTCTCGTCGAGGGAGGTGGAAGCGAGGAGATCCATAAGTGTTCCATTGAATTCCC CTGAAACACACAGTACCGGTTCAGCGATCCACTCTCTCCTTTCGAACCATCTCCATTCGGAGATGCCTAATCATCAGACATCAGAACCATTTAGAATTTT TGTGGCGACATGGAATGTGGGAGGGAAATCTCCACACAGTGGCCTCAATCTCGATGATGTTCTCCAAGAAATTGTTCCATTGAATGCTGGCAATGTCCTT GGGGCAGAAGATAGTGAGCCTGCTGCAAAGTGGCTTGCTCTCATCAATCAATCTCTGAACAAATCATATACTGTCGGTTCAAAAGGTTCAAACCCTTTTA CCACTATTGCAACCCCACTTCCTTTTCAGAGGCCTTCTCTTAGGAAGATATGCAAGAGCTTCAGGACTGAGAGTGTTCGTCGCCTCAAGACCTGCAACTG CAGTCCTGTGATGGATAGGAAAAATAGTAAGGACTTCTGCATGTGGTGCCCGCAGACAAACGTAGGAGATGATGGATTTTCCTCCGAAGAAGAGGACGAT GGACTTAGCAGCTATGGATCTTTAGAGATTTCTTCTGCTGCTGCTACTCTCGGCGCTAATCAAATGAGGTACAGCCTGATTGTGGGGAAACAGATGGTTG GGATTTTCCTGACGGTTTGGATGAAGAAGGAGCTTGTTCAGCATGTTGGACACTTGAGAGTTTCTTACATTAGTCGCGGAATCATGGGTTGCCTTGGCAA CAAGGGATGTATATCGGTGAGCATGTCATTCCATCAGACAACGTTTTGCTTCATATGCAGTCATTTGGCATCAGGGGAGAAGGAAGGAGATGAACTGAGG AGAAATTTGGATGTGATAGAGATACTCAAGAACACTCAATTTCCCAGGAATTGCAAATCACCTTACACCAACATGCCGGATAGAATCATCCAACACAACC GGATCATATGGCTGGGTGACCTGAACTACAGAATAGCTCTGAATTATTCGGAGACTCGAAAGCTTGTAGAAAGGAATGACTGGAATGCACTCTTTGACAA AGATCAGCTGAAGATTGAGAGGGAAAAAGGGAGAGTGTTCAAAGGATGGAAAGAAGGGAAGATCTACTTTGCACCAACTTACAAATACTCATGGGACTCT GACATTTATGCTGGTGAAACTGTCGACTCCAAAAACAAGAGAAGAACTCCAGCTTGGTGTGACAGAATACTTTGGCATGGAGATGGAATCCAACAGATGT CCTACGTTAGAAAGGAATACCGGTTCTCTGATCACAGGCCGGTGTGTGCAACGTTCTTGGTCGATGTCGAGGTTGGTGAGATTGCGTCAAGGAGGGCATC ATCAGCTTACAGGTTCTGA
AA sequence Show only first row Show all	>Lus10028884 pacid=23177263 polypeptide=Lus10028884 locus=Lus10028884.g ID=Lus10028884.BGIv1.0 annot-version=v1.0 MNNQDSNNQSFLKKIFSSREVEARRSISVPLNSPETHSTGSAIHSLLSNHLHSEMPNHQTSEPFRIFVATWNVGGKSPHSGLNLDDVLQEIVPLNAGNVL GAEDSEPAAKWLALINQSLNKSYTVGSKGSNPFTTIATPLPFQRPSLRKICKSFRTESVRRLKTCNCSPVMDRKNSKDFCMWCPQTNVGDDGFSSEEEDD GLSSYGSLEISSAAATLGANQMRYSLIVGKQMVGIFLTVWMKKELVQHVGHLRVSYISRGIMGCLGNKGCISVSMSFHQTTFCFICSHLASGEKEGDELR RNLDVIEILKNTQFPRNCKSPYTNMPDRIIQHNRIIWLGDLNYRIALNYSETRKLVERNDWNALFDKDQLKIEREKGRVFKGWKEGKIYFAPTYKYSWDS DIYAGETVDSKNKRRTPAWCDRILWHGDGIQQMSYVRKEYRFSDHRPVCATFLVDVEVGEIASRRASSAYRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04980			DNAse I-like superfamily prote...		Lus10028884 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039428 [exp]	1.4	0.9187
AT5G04980			DNAse I-like superfamily prote...		Lus10008934 [exp]	1.4	0.8941
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10036653 [exp]	4.0	0.8554
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	6.5	0.8677
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	10.6	0.8463
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	10.7	0.8473
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	11.2	0.8327
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	16.0	0.8300
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10024607 [exp]	17.7	0.7975
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	18.9	0.8271

Compare expression of checked genes

Lus10028884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.