Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04990 406 / 3e-138 ATSUN1 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) AT3G10730 359 / 2e-120 ATSUN2 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 2, SAD1/UNC-84 domain protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008933 [exp] 865 / 0 AT5G04990 428 / 5e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) Lus10034856 [exp] 622 / 0 AT5G04990 429 / 2e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247900 [exp] 508 / 1e-178 AT5G04990 429 / 2e-147 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1) Potri.008G010900 [exp] 491 / 1e-171 AT5G04990 400 / 4e-136 ARABIDOPSIS SAD1/UNC-84 DOMAIN PROTEIN 1, SAD1/UNC-84 domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF07738 [flax] [poplar] Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence Show only first row Show all	>Lus10028885 pacid=23177226 polypeptide=Lus10028885 locus=Lus10028885.g ID=Lus10028885.BGIv1.0 annot-version=v1.0 ATGTCCGCTTCGACCGTGTCCATCACGGCGAACCCCGCGGCGGCTCGCCGGAGGCCTGTTCTCATCGGCGAAAAGAAGTCCAACACCGTTGAGTTGTTCC CCAACGAAGCGCAAGCCAAGAATGGCGGCGACACTGGTAATATCATTGGTAAGGATAAAGTCGCTCCGGCGCACAGCAAGGATGTGAGTCATAACTCGAT CCGGGGCGAAGCGATTCTCGAGAGAACGTCCAAGGATCCGTTGCTGCTCAGGAAGAGCAACGCGGTTAATTCGACGGTTTCTCCGCGCAGGGGACGGAAA CTGGCACCGAAACCTGTGAAGCCACGGTGGGTTACTGTCGCTAGTATTTTTACCAAGAATTTTGCGCTTTTGCTCGTGTTGGTGGGGCTAGTTCAGTTGA TCAGAAGTTTAGCTTCAAAATCGGAAAGCCCTAATGCAGGGATGATGACTGGTTTAGCGGAGATTGAAGGGCGGATTTCAGAAGTTGAGTCGTTGTTGAA GACTACTGCCAAAATGATTCAGGTTCAGGTGGAGGTTGTAGATAAAAAGATTGAGAACGAGATAGGAGGCTTGAGGCATGAAGTGAACAAGAAACTTCAG GATAGAAGTGTGAATTTCGACACAATGTTGAAGAATTTTGAAACCAGGAGTGAAGTGTTGGAGAAGTCAATAGCGGAGATAAAGGCAGGGGATTGGTTGA CAAAGGATGAGTTCGGGAAGTTCTATGAAGAACTGAAGAAGACGAAAGATGTTCAGCTTGGTGAAGACTCTCATAGTTTAGATGTTATTAGAGCTTATGC TAAAGAGATTGTGGAGAAGGAAATTGAGAAGCATGCTGCGGATGGCCTTGGAAAGGTGGATTATGCCCTTGCTGAGGGTGGTGCGTTTGTGATAAAGCAT TCTGAGTTTTTTGGTAAGCAGAGTCCCTTGAGCGACTGGCTCCGGAGTACTCGTGGTGTTAGTGGGGCTCATGCTGACGCATCTAAGATGTTAAGGCCGA GTTTTGGAGAGCCTGGGCAGTGTTTTCCTCTGAAAGGAACTAGTGGATTTGTGGAGATAAGCCTCCGTAAAGCTATTGTTCCTGAGGCTATTACGTTGGA GCATGTTGCCAAGAGTGTTGCTTACGATCGATCAAGCGCCCCAAAGGACTGCCGTGTGACTGGTTGGTTAAGAGGCTCTGACATCGCTTCACCCGTGGAT ACTGAAAAGACGTTGCTTACCGAGTTCACTTACGACCTGGAAAAGAGTAATGCACAAACCTTTAATGTTTTGGCCACCCGTGCCATTGATACTGTTAGGT TGGATTTCACGTCGAACCACGATAGCCATACCCACACGTGTATATACCGGTTCCGGGTACATGGTTATGAACCCGACTCTGGTTCGGTGCGTGCATTGCA GAATTGA
AA sequence Show only first row Show all	>Lus10028885 pacid=23177226 polypeptide=Lus10028885 locus=Lus10028885.g ID=Lus10028885.BGIv1.0 annot-version=v1.0 MSASTVSITANPAAARRRPVLIGEKKSNTVELFPNEAQAKNGGDTGNIIGKDKVAPAHSKDVSHNSIRGEAILERTSKDPLLLRKSNAVNSTVSPRRGRK LAPKPVKPRWVTVASIFTKNFALLLVLVGLVQLIRSLASKSESPNAGMMTGLAEIEGRISEVESLLKTTAKMIQVQVEVVDKKIENEIGGLRHEVNKKLQ DRSVNFDTMLKNFETRSEVLEKSIAEIKAGDWLTKDEFGKFYEELKKTKDVQLGEDSHSLDVIRAYAKEIVEKEIEKHAADGLGKVDYALAEGGAFVIKH SEFFGKQSPLSDWLRSTRGVSGAHADASKMLRPSFGEPGQCFPLKGTSGFVEISLRKAIVPEAITLEHVAKSVAYDRSSAPKDCRVTGWLRGSDIASPVD TEKTLLTEFTYDLEKSNAQTFNVLATRAIDTVRLDFTSNHDSHTHTCIYRFRVHGYEPDSGSVRALQN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	0	1
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	4.8	0.8498
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	5.1	0.8066
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Lus10021577 [exp]	6.9	0.7512
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	7.1	0.7775
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	7.7	0.7966
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	8.3	0.8029
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10023050 [exp]	10.2	0.7650
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	14.7	0.7633
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10022834 [exp]	17.9	0.7423
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	20.9	0.7447

Compare expression of checked genes

Lus10028885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.