Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71890 67 / 5e-14 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G22710 59 / 4e-11 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G71880 57 / 1e-10 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT2G02860 49 / 6e-08 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) AT5G06170 44 / 5e-06 ATSUC9 sucrose-proton symporter 9 (.1) AT2G14670 44 / 6e-06 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 42 / 2e-05 ATSUC6 sucrose-proton symporter 6 (.1) AT1G66570 41 / 6e-05 ATSUC7 sucrose-proton symporter 7 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003330 [exp] 66 / 3e-14 AT1G71890 225 / 2e-71 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10014821 [exp] 61 / 1e-11 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10017910 [exp] 60 / 2e-11 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10009428 [exp] 59 / 5e-11 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10018914 [exp] 57 / 2e-10 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 49 / 8e-08 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 49 / 8e-08 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10030492 [exp] 49 / 9e-08 AT2G02860 863 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Lus10012844 [exp] 49 / 1e-07 AT2G02860 696 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115200 [exp] 59 / 4e-11 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 58 / 5e-11 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 51 / 2e-08 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.008G148100 [exp] 49 / 7e-08 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.010G093600 [exp] 49 / 1e-07 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028886 pacid=23177337 polypeptide=Lus10028886 locus=Lus10028886.g ID=Lus10028886.BGIv1.0 annot-version=v1.0 ATGAGTTGTCAAAATATTATCTCTTCGATCCTAAATTTCGCTACATTTCCGCTAGCGCCCCAACAGGGGCTGCCGCTGGCGGTGACGTATAGCATTCCGT TTGCGATGGCGTCGATCTACTCGTATAGATCTGGGGCTGGGCAGGGGCTGTCGATGGGAGTTTTGAGTTTTGCGGTATGTCTGCCTGCAAATGGTGGTTT CCTTAGGGAGTGGTTCGTTGGACGCTGCGTTGGGTGGCGGGATTTTGCCGGCGTTTGTGGTCGGAGCTGTGGTGGCCATTGTAAGTGGAATATGTGCCGT CACTCTATTGCCGAAGCCGAGGGTTCCGTCGTGAAAATCCATGTATAG
AA sequence Show only first row Show all	>Lus10028886 pacid=23177337 polypeptide=Lus10028886 locus=Lus10028886.g ID=Lus10028886.BGIv1.0 annot-version=v1.0 MSCQNIISSILNFATFPLAPQQGLPLAVTYSIPFAMASIYSYRSGAGQGLSMGVLSFAVCLPANGGFLREWFVGRCVGWRDFAGVCGRSCGGHCKWNMCR HSIAEAEGSVVKIHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	1.0	0.9650
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	2.8	0.9457
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	3.2	0.9217
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10007696 [exp]	3.7	0.9189
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	3.9	0.9265
					Lus10042813 [exp]	6.6	0.9219
AT1G67110		CYP735A2	"cytochrome P450, family 735, ...		Lus10006246 [exp]	6.9	0.8947
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	7.7	0.9203
AT5G19875			unknown protein		Lus10008006 [exp]	11.0	0.8460
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10039213 [exp]	13.3	0.8468

Compare expression of checked genes

Lus10028886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.