Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56850 164 / 4e-48 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 129 / 4e-35 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G44460 92 / 1e-20 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G34000 79 / 4e-16 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 76 / 5e-15 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT3G19290 70 / 5e-13 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT2G36270 69 / 7e-13 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G42910 56 / 2e-08 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G44080 55 / 3e-08 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G49720 50 / 1e-06 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028889 [exp] 441 / 5e-156 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 402 / 7e-141 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10008928 [exp] 214 / 6e-69 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10008927 [exp] 165 / 2e-50 AT3G56850 139 / 1e-41 ABA-responsive element binding protein 3 (.1) Lus10017049 [exp] 122 / 3e-31 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 115 / 5e-29 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 98 / 1e-22 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10006489 [exp] 96 / 1e-21 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10027897 [exp] 93 / 1e-20 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G010800 [exp] 275 / 6e-91 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 252 / 5e-82 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 221 / 5e-70 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 144 / 1e-40 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.006G025800 [exp] 129 / 7e-35 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 112 / 9e-29 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.009G164500 [exp] 96 / 4e-22 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G018500 [exp] 91 / 1e-20 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.004G140600 [exp] 90 / 8e-20 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.002G090800 [exp] 86 / 1e-18 AT3G56850 136 / 9e-38 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10028888 pacid=23177240 polypeptide=Lus10028888 locus=Lus10028888.g ID=Lus10028888.BGIv1.0 annot-version=v1.0 ATGAATCTGGACGAACTTCTTAGAAATGTATGGACAGCTGAAGCGAACCATGTTACGGAGGCCAAAAACACTCAGATGGCAGATAGTCGAACATCCTTGC CGCGGCAGGGAAGCTTGTCAATAGCTGGTGCTTTGAGCAAAAAGACAGTCGATGAGGTTTGGAGAGACATTCAACAAAGCAAAAATAATGGAGAGAGGAA GTCTAAAGATAGACAACCCACTTTGGGGGAGATGACATTGGAGGATTTCCTTGCCAAGGCAGGAGTTGTTGGTGAGGAACCTATCGATGATAATAATAAT AGAGATGTTGCTATTGCCGGTTCTGATGCAAATGCAGCACAACGGTTTCCTGAACATGGCCAATGGTTGCAGTATCCGCATGCACAGTTCCAACATCCAC AGCCTAATGTGATGGGGATGTTTATGCCAGGCCAGCCTGTGCCTCAGCAAGTCCATATGGGGGCTGGTTCTGTGATGGATGTTGCATATCCGGAGAATCC AGTTCCGATAGCTCCACCACCTCTAATTGGGACATTGTTGGATTCACAAATGACTTCCAGGAAAAGAGTTGCACCCGATGAAGTAGTTGTGAAGAATGTT GAAAGGAGGCAGAAGAGGATGATAAAAAACCGAGAATCAGCTGCCCGATCAAGAGCTCGGAAACAGGAGGAGGAAGCGGTGGTGGTTCTGGAGGTGGAGG CGGCGGTGGAGGTGCTGCCGGTGAGCATGGTGGTGTTGGAGCTTACGGAGGATGGATCTGACGTGGGAGGTAGTGGTAGTGGAGAAGGAAGTGGTGCTGG TTATGCAGGAGGTGTAGCTGGATATGGCGATGGAGGTGGAGGAGGAGCTGGAGGTGGCGGTGGTGGTGGAGGAGACCATGGTGCTGGTGCTGGTGCTGGT GGTGGTGGTGAGGGTGCTGGCGGAGCTGGCTATGGTGGAGGAGAAGGAGCCGGTCATGGTGGTGGAGCAGGTGGTGGTGGTGGTGATGGTGGAGGAGGAG GAGGAGGCGGAGTTGTCGGTGCAGATGCTGGAGGGGCACATGGAGGTGGATATGGTGGTGGGGCAGATGCATAA
AA sequence Show only first row Show all	>Lus10028888 pacid=23177240 polypeptide=Lus10028888 locus=Lus10028888.g ID=Lus10028888.BGIv1.0 annot-version=v1.0 MNLDELLRNVWTAEANHVTEAKNTQMADSRTSLPRQGSLSIAGALSKKTVDEVWRDIQQSKNNGERKSKDRQPTLGEMTLEDFLAKAGVVGEEPIDDNNN RDVAIAGSDANAAQRFPEHGQWLQYPHAQFQHPQPNVMGMFMPGQPVPQQVHMGAGSVMDVAYPENPVPIAPPPLIGTLLDSQMTSRKRVAPDEVVVKNV ERRQKRMIKNRESAARSRARKQEEEAVVVLEVEAAVEVLPVSMVVLELTEDGSDVGGSGSGEGSGAGYAGGVAGYGDGGGGGAGGGGGGGGDHGAGAGAG GGGEGAGGAGYGGGEGAGHGGGAGGGGGDGGGGGGGGVVGADAGGAHGGGYGGGADA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10028888 [exp]	0	1
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019029 [exp]	1.7	0.9804
AT3G52790			peptidoglycan-binding LysM dom...		Lus10027407 [exp]	2.4	0.9794
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	3.9	0.9645
AT5G17820			Peroxidase superfamily protein...		Lus10013631 [exp]	5.3	0.9490
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	5.9	0.9423
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025325 [exp]	7.4	0.9142
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10033183 [exp]	10.6	0.8319
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10013030 [exp]	11.4	0.9149
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10009428 [exp]	11.7	0.9409
AT2G39040			Peroxidase superfamily protein...		Lus10041250 [exp]	12.6	0.9061

Compare expression of checked genes

Lus10028888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.