Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56850 240 / 3e-78 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 199 / 2e-62 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G44460 127 / 6e-34 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G19290 109 / 6e-27 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT4G34000 108 / 2e-26 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 101 / 4e-24 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT2G36270 99 / 4e-23 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G42910 72 / 5e-14 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G44080 64 / 2e-11 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G49720 62 / 1e-10 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008929 [exp] 540 / 0 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10028888 [exp] 447 / 1e-158 AT3G56850 157 / 1e-45 ABA-responsive element binding protein 3 (.1) Lus10008928 [exp] 320 / 3e-111 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10008927 [exp] 232 / 4e-77 AT3G56850 139 / 1e-41 ABA-responsive element binding protein 3 (.1) Lus10017049 [exp] 173 / 7e-51 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 165 / 7e-48 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 140 / 2e-38 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10006489 [exp] 135 / 1e-36 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10014066 [exp] 115 / 5e-29 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G010800 [exp] 405 / 1e-142 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 377 / 1e-131 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 351 / 2e-121 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 211 / 7e-67 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 202 / 2e-63 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.006G025800 [exp] 198 / 4e-62 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1) Potri.002G090800 [exp] 157 / 1e-45 AT3G56850 136 / 9e-38 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 150 / 1e-43 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.009G164500 [exp] 127 / 4e-34 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G083000 [exp] 118 / 3e-30 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10028889 pacid=23177176 polypeptide=Lus10028889 locus=Lus10028889.g ID=Lus10028889.BGIv1.0 annot-version=v1.0 ATGGGTTCCAATGGTGATGGTAGGAGTAGCGGCAATCTGTCTCATTTGCAGCCTTTGGGCCGGCAGAACTCATTGTACAACCTCACTCTGGATGAGGTTC AAAATCAGTTGGGTGACTTGGGGAAACCCTTCAGTAGCATGAATCTGGACGAACTTCTTAGAAATGTATGGACAGCTGAGGCTAACCATGTTACGGGTGC AGAGGCCGAAAACACTCAGATGGCCGATAGTCAAACATCCTTGCCGCGGCAGGGAAGCTTGTCAATAGCTGGTGCTTTGAGCAAAAAGACAGTCGATGAG GTTTGGAGAGACATTCAACAAAGCAAAAATAATGGGGAGAGGAAGTCTAAAGATAGACAACCCACTTTGGGGGAGATGACATTGGAGGATTTCCTTGCCA AGGCAGGAGTTGTTGGTGAGGAACCTATCGATGATAATAATAATAGAGATGTTGCTATTGCCGGTTCTGATGCAAATGCAGCACAACGGTTTCCTCAACA TGGCCAATGGTTACAGTATCCGCATGCACAGTTCCAGCATCCACAGCCTAATGTGATGGGGATGTTTATGCCAGGCCAGCCTGAGCCTCAGCAAGTCCAT ATGGGGGCTGGTTCTGTGATGGATGTTGCATACCCGGAGAATCCAGTTCCGATAGCTCCACCACCTCTAATTGGGACATTGTCGGATTCACAAATGGCTT CCAGGAAACGAGGTGCACCCGATGAAGTAGTTGTGAAGAATGTTGAAAGGAGGCAGAAGAGGATGATAAAAAACCGAGAATCAGCTGCCCGATCAAGAGC TCGGAAACAGGCATACACAAATGAGCTAGAGAACAAAATTTCTCGCCTGGAAGAGGAAAATGAAAGGCTGAGAAAATTAAAGGAGCTGGAGAACATATTG CCAAGTGCACCAGCAGCACCTGAACCCAGGTATCAGCTTCGGCGAACGTCGTCATCACCATTCTAA
AA sequence Show only first row Show all	>Lus10028889 pacid=23177176 polypeptide=Lus10028889 locus=Lus10028889.g ID=Lus10028889.BGIv1.0 annot-version=v1.0 MGSNGDGRSSGNLSHLQPLGRQNSLYNLTLDEVQNQLGDLGKPFSSMNLDELLRNVWTAEANHVTGAEAENTQMADSQTSLPRQGSLSIAGALSKKTVDE VWRDIQQSKNNGERKSKDRQPTLGEMTLEDFLAKAGVVGEEPIDDNNNRDVAIAGSDANAAQRFPQHGQWLQYPHAQFQHPQPNVMGMFMPGQPEPQQVH MGAGSVMDVAYPENPVPIAPPPLIGTLSDSQMASRKRGAPDEVVVKNVERRQKRMIKNRESAARSRARKQAYTNELENKISRLEEENERLRKLKELENIL PSAPAAPEPRYQLRRTSSSPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10028889 [exp]	0	1
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10000104 [exp]	29.6	0.7624
AT1G15190			Fasciclin-like arabinogalactan...		Lus10015081 [exp]	36.1	0.7528
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10004261 [exp]	43.6	0.7166
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	113.1	0.6791
AT4G08910			unknown protein		Lus10025524 [exp]	150.1	0.6897
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10027132 [exp]	167.8	0.6836
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10018761 [exp]	187.9	0.7018
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	195.0	0.6773
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10007941 [exp]	203.1	0.6870
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	205.1	0.6754

Compare expression of checked genes

Lus10028889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.