Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09600 564 / 0 Protein kinase superfamily protein (.1) AT1G53050 556 / 0 Protein kinase superfamily protein (.1) AT1G71530 529 / 0 Protein kinase superfamily protein (.1.2) AT1G54610 527 / 0 Protein kinase superfamily protein (.1.2.3) AT5G50860 520 / 2e-178 Protein kinase superfamily protein (.1) AT1G57700 524 / 3e-178 Protein kinase superfamily protein (.1) AT5G44290 522 / 3e-178 Protein kinase superfamily protein (.1.2.3.4) AT1G33770 519 / 1e-177 Protein kinase superfamily protein (.1) AT1G03740 511 / 4e-173 Protein kinase superfamily protein (.1.2) AT1G18670 504 / 2e-170 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008925 [exp] 1124 / 0 AT1G09600 643 / 0.0 Protein kinase superfamily protein (.1) Lus10000170 [exp] 883 / 0 AT1G09600 570 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 568 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 565 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 548 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 545 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 545 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 537 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033684 [exp] 529 / 8e-180 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226900 [exp] 624 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 587 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 581 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 575 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 552 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 548 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G073100 [exp] 546 / 0 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G103300 [exp] 546 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 546 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 541 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028890 pacid=23177112 polypeptide=Lus10028890 locus=Lus10028890.g ID=Lus10028890.BGIv1.0 annot-version=v1.0 ATGATTCCTCTGAGCAGAGCAAGACTATTTAAATTTCTGGGGATCAAGAAAGTTTGGGTGGGTGTTATGGGCTGCATTTGCTCCAAAGGAGGCCAGCAAG CGAATGGTAGTTTCAATGTAGGGAGTAGCGATGGCAAAACCAGCAAAGGGAAGAGCAAAAAATCTTCCAGACGGTTAGTTTCGAAAAGAGACCAAGATAC CGAGACCGACGAGGAGTATGAGAACGTTTGCTCCATTATTAACCAACAAGGTAATGATGTCGACCATGATGTCGGGTCGTCCTCTCCGTTGGCAGTCCAC GATCATCACCACGAGGTCGACAGGAAGAGCAAATCCAAGATGTCGGGCGTAGGGATTCGAAGCAAGGCGGTTGGCGAGAAAGGAGCTCAAGTTGTCGCCG GTTGGCCTTCTTGGCTCACTGCTGTTGCTGGTGAAGCCATCAATGGTTGGATCCCTCGAAGGCTCGACTCCTTTGAAAAGCTAGAAAAGATTGGACAAGG AACATATAGTAGCGTTTACAAATCGAAAGATCTCGAGTCGAAGAAAATAGTCGCACTAAAGAAAGTTCGTTTTGCCAACATGGATCCAGAGAGTGTCAAG TTCATGGCAAGAGAGATAATCATATTACGTAGACTAGACCATCAGAATGTTATGAAGCTTGAAGGCATCATCACTTCAAGAATGTCCGGTAGCTTGTACC TCGTTTTCGAGTACATGGACCACGATCTCTCTGGTCTCTTATCAAGTGCAGGGTCTCAATTCACCGAACCTCAGATTAAATGCTACATGAAGCAGCTACT CCAGGGACTAGAACATTGCCACAGCCGCGGAATCATGCACCGCGACATGAAAGGATCGAATCTTCTGATCGACTCCAACGGCATACTCAAGATTGCTGAC TTCGGTCTTGCAACCTTCTGTAAGCCTAGTGACGACCAGCCTTTAACGAGCCGGGTCGTCACTTTATGGTACAGACCTCCCGAGCTTTTGCTCGGATCAA CGGAGTACGGCGTGGAAGTCGATTTATGGAGTTCTGGTTGCATCCTGGCTGAATTGTTCAATGGAAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCA GATTCATAAAATCTTCAAACTTTGTGGATCGCCATCAGATGGGTACTGGAAGAAGTCAAAATTGTCTCATAACACAGTCTTCAAACCACAACAGCCGTAC AAACGACGTGTCGTTGAAACGTTCAAGGACATGATTCCCTCGTCGGCTATGTCACTTCTTGAAGTGCTTCTTGCCGTAGAGCCTGAAGATCGTGGGTCAG CAACTTCAGCACTTACTAGCGAGTTCTTCACCACAGAGCCTCTTCCATGTGACCCGTCTAGCCTGCCAACTTACCCTCCCAGCAAGGAGTTTGATGTCAA GTTCCGCGAAGACGAAGCTAAAAGAAAAAGCAGAGCAGGAGGCAAAGGCAGGGGAAGGGAATCAGAAAGGATCACATTCACCAAAGGAACAAGACTTGTC GCAGCTCCTAACCCCAACGTGAAGAGATCAAAAGCACAGGGGACCAAGGATAGATCAATCATGAACAACGAAAGGCAGAGCAATAAAGATGACGACGGCG AAGCTTCCAATAAGGCCTCAACATCAACAAATGCAACTTCTACTTCTTCAAAGCAAACACCCAAGTCTCCGCCGTCAAAATCTGCAGCGCAAGCGGCTCA ACTGTCGAGATTTACGAACTCAGTGGTCATTAGAGACAACAGCTCACACTATGATTATGGCGGCGGTAACTCCGACCACTGGCAGAAAGTTCGTGATCAC GCCCCTACTGGCATGGATGCCACCAGGGCGTTTTACGGGAAGAAAGGAAGGATGCATCATTCGGGGCCATTGATGACGGCGGGAGGGAACATTGACGAGA TGTTGAAAGAGCACGAACGGAGAATTCAACACGCCGTGAGGAAAGCAAGGTCGGGGAAGAATAAGAACTTCCAAGCTGATGGCGGAGGTGAACAAGATGG ATCTCAGTTATATCGAGTGGAAAAATGA
AA sequence Show only first row Show all	>Lus10028890 pacid=23177112 polypeptide=Lus10028890 locus=Lus10028890.g ID=Lus10028890.BGIv1.0 annot-version=v1.0 MIPLSRARLFKFLGIKKVWVGVMGCICSKGGQQANGSFNVGSSDGKTSKGKSKKSSRRLVSKRDQDTETDEEYENVCSIINQQGNDVDHDVGSSSPLAVH DHHHEVDRKSKSKMSGVGIRSKAVGEKGAQVVAGWPSWLTAVAGEAINGWIPRRLDSFEKLEKIGQGTYSSVYKSKDLESKKIVALKKVRFANMDPESVK FMAREIIILRRLDHQNVMKLEGIITSRMSGSLYLVFEYMDHDLSGLLSSAGSQFTEPQIKCYMKQLLQGLEHCHSRGIMHRDMKGSNLLIDSNGILKIAD FGLATFCKPSDDQPLTSRVVTLWYRPPELLLGSTEYGVEVDLWSSGCILAELFNGKPIMPGRTEVEQIHKIFKLCGSPSDGYWKKSKLSHNTVFKPQQPY KRRVVETFKDMIPSSAMSLLEVLLAVEPEDRGSATSALTSEFFTTEPLPCDPSSLPTYPPSKEFDVKFREDEAKRKSRAGGKGRGRESERITFTKGTRLV AAPNPNVKRSKAQGTKDRSIMNNERQSNKDDDGEASNKASTSTNATSTSSKQTPKSPPSKSAAQAAQLSRFTNSVVIRDNSSHYDYGGGNSDHWQKVRDH APTGMDATRAFYGKKGRMHHSGPLMTAGGNIDEMLKEHERRIQHAVRKARSGKNKNFQADGGGEQDGSQLYRVEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09600			Protein kinase superfamily pro...		Lus10028890 [exp]	0	1
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017176 [exp]	1.0	0.9759
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10005516 [exp]	2.0	0.9346
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	5.7	0.9213
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	6.6	0.9213
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	7.4	0.9213
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	8.1	0.9213
					Lus10017294 [exp]	8.8	0.9213
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10013405 [exp]	8.8	0.7132
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	9.4	0.9213
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	9.9	0.9213

Compare expression of checked genes

Lus10028890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.