Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57680 92 / 3e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008924 [exp] 250 / 3e-81 AT1G57680 369 / 3e-126 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G003500 [exp] 162 / 3e-47 AT1G57680 284 / 4e-93 unknown protein Potri.004G227000 [exp] 150 / 6e-43 AT1G57680 306 / 5e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028891 pacid=23177255 polypeptide=Lus10028891 locus=Lus10028891.g ID=Lus10028891.BGIv1.0 annot-version=v1.0 ATGGCAGGAGAATGTCTGCAAAGTCTACATCATTTCGAATCTCGGGTTTGCCGAACCATGTTTATTCCTCACGCTTGTGTTTCTCCTGCGTGCGTTTCGA ATCTCGGGTTTGCCGAGCCATGTTTATTCCTCACGCTTGTGTTTCTCCTGCGTGCTCCCTTGCAGAGGATGGACTCTGGGATTTTAACTCAGAGATGGAA TTGGAAAACAGCAGGATACATTCTTCTCTTTTGCCTACCAGTGTTCATTCTTCAGCTCTTTATTATTCTAATTGGTCCAGAGCTACACAAGGAAGATAGT ACCTTGATGAAGAGCTTGCCCCACTATTTTACCAAGGCAGCTACAACGCAGAGTAGCGCTGTTATTGCACTCTTTTTAACAGAACCAGAGAAACCACTCT ATGAAGTGCTGGCTTTTACAGCATTTCTTGCCCTTCTATGTTGCGCCGGAATCTCTATTTGCATGCTGGTTTACCTCCCCGTTACAGATTCATTGGCCTT GGGGTGTGTAAGAGATTTGGAGGCGAGGAGGAGGATTAGTGAAGAGCACAATGAAAATGTCTCCCTTATTGCTGCTAACCAGAGCTACCCGGAGGAAGAA AGCAGTCGAATTAGCCCTGACAGGACATCTGATGAATCAACGAAGCGTGGATCTATATCATTCCGTGCTTACGGAAAGGATGGGACATCGACTGGAGCAT TTGTCGAGCTAAGCCTATTTTCTCCTAGTCGAGATGCGACTCCACCGGGGTCACCCCCACTTCTTGGTTGGCCAATGCGACCTTGTGAACAAGCTCTTCA TGGTCATGGACCTTAG
AA sequence Show only first row Show all	>Lus10028891 pacid=23177255 polypeptide=Lus10028891 locus=Lus10028891.g ID=Lus10028891.BGIv1.0 annot-version=v1.0 MAGECLQSLHHFESRVCRTMFIPHACVSPACVSNLGFAEPCLFLTLVFLLRAPLQRMDSGILTQRWNWKTAGYILLFCLPVFILQLFIILIGPELHKEDS TLMKSLPHYFTKAATTQSSAVIALFLTEPEKPLYEVLAFTAFLALLCCAGISICMLVYLPVTDSLALGCVRDLEARRRISEEHNENVSLIAANQSYPEEE SSRISPDRTSDESTKRGSISFRAYGKDGTSTGAFVELSLFSPSRDATPPGSPPLLGWPMRPCEQALHGHGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57680			unknown protein		Lus10028891 [exp]	0	1
AT5G11000			Plant protein of unknown funct...		Lus10005342 [exp]	2.4	0.7841
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	4.9	0.7819
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	5.8	0.8100
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10035329 [exp]	7.5	0.7667
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10000804 [exp]	8.7	0.7593
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	11.2	0.7575
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	20.3	0.7558
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	21.9	0.7380
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10035105 [exp]	25.5	0.7393
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10003312 [exp]	26.0	0.7330

Compare expression of checked genes

Lus10028891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.