Plant FIBer expression Database

Lus10028892 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10040 215 / 5e-74 CYTC-2 cytochrome c-2 (.1)
AT1G22840 204 / 6e-70 CYTC-1, ATCYTC-A CYTOCHROME C-A, CYTOCHROME C-1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008922
[exp]
233 / 2e-81 AT4G10040 214 / 7e-74 cytochrome c-2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G101601
[exp]
212 / 6e-73 AT4G10040 214 / 6e-74 cytochrome c-2 (.1)
Potri.019G076001
[exp]
210 / 3e-72 AT1G22840 211 / 2e-72 CYTOCHROME C-A, CYTOCHROME C-1 (.1.2)
Potri.019G076101
[exp]
204 / 1e-69 AT1G22840 204 / 1e-69 CYTOCHROME C-A, CYTOCHROME C-1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0318 Cytochrome-c PF00034 Cytochrom_C Cytochrome c
Representative CDS sequence
>Lus10028892 pacid=23177140 polypeptide=Lus10028892 locus=Lus10028892.g ID=Lus10028892.BGIv1.0 annot-version=v1.0
ATGGCGACCTTCAACGAAGCTCCTCCCGGTAATCCCGACGCCGGAGCTAAGATCTTCAAGACCAAGTGCGCCCAGTGCCATACCGTCGACAAAGGCGCTG
GTCACAAACAAGGTCCTAATTTGAATGGACTTTTCGGAAGGCAGTCTGGAACTACCCCAGGCTACTCATACTCTGCTGCCAATAAGAATATGGCTGTGAA
CTGGGCAGAGAACACATTGTACGACTACTTGCTTAACCCCAAGAAGTATATCCCTGGAACTAAGATGGTGTTCCCTGGACTGAAGAAGCCACAGGAGCGT
GCAGACCTTATTGCGTATCTGAAGCAATCCACTGCCTGA
AA sequence
>Lus10028892 pacid=23177140 polypeptide=Lus10028892 locus=Lus10028892.g ID=Lus10028892.BGIv1.0 annot-version=v1.0
MATFNEAPPGNPDAGAKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWAENTLYDYLLNPKKYIPGTKMVFPGLKKPQER
ADLIAYLKQSTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G10040 CYTC-2 cytochrome c-2 (.1) Lus10028892
[exp]
0 1
AT3G44150 unknown protein Lus10029366
[exp]
1.7 0.9510
AT5G13430 Ubiquinol-cytochrome C reducta... Lus10035118
[exp]
2.8 0.9494
AT5G13450 ATP5 delta subunit of Mt ATP syntha... Lus10019706
[exp]
5.5 0.9371
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Lus10026519
[exp]
5.5 0.9448
AT4G37830 cytochrome c oxidase-related (... Lus10019250
[exp]
6.0 0.9413
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Lus10023192
[exp]
8.5 0.9331
AT1G54140 TAF9, TAFII21 TBP-ASSOCIATED FACTOR 9, TATA ... Lus10012411
[exp]
8.7 0.9240
AT3G02090 MPPBETA Insulinase (Peptidase family M... Lus10004938
[exp]
11.4 0.9389
AT1G22520 Domain of unknown function (DU... Lus10009454
[exp]
12.6 0.9178
AT2G33040 ATP3 gamma subunit of Mt ATP syntha... Lus10007534
[exp]
13.4 0.9052

Lus10028892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.